Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq67 118 2e-21 seq111 96.9 5e-15 seq47 96.9 5e-15 >seq67 Length=3709677 Score = 118 bits (130), Expect = 2e-21 Identities = 204/293 (70%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || |||||||| | |||||||| || || | | | || ||||||| | | | Sbjct 1683628 CCGTCCCGCAATCTGATTGGTGAACGACTCCACCAGGTTGCTGATGCCGTGCTCGGTCAC 1683569 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 || ||| ||||| | || || || | ||| | || | | || | ||| | ||| Sbjct 1683568 GACGGAGGTGTTGAAGACAAACTGCTTGTAGCTGTAATCTGTCTCCTCGATGTGGAAACT 1683509 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||| |||| ||||| |||||| |||| ||||| |||||||| | ||| || |||||||| Sbjct 1683508 ATCGGGCATCAGAGGGTGCCAGTGGTAAAGGGTGTTGAACTCAGACGCGATGCGGTTCTG 1683449 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| || || | ||| |||||||| | || | |||||| || Sbjct 1683448 GTACTGGAAGCGCTGGT--TAAAGAGCAGCTCGGGGTCAAACTTGAGTTTGAAGTGATAG 1683391 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 ||||| || ||||| || || | ||| | || || ||||| || || || Sbjct 1683390 CCGCTCAGATGCTGCACGTAGTCCTCGATCACGATTTTGATGGTCTCACCTGT 1683338 Score = 113 bits (124), Expect = 7e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || || ||||| || || || || |||||||||||||| ||||||||| || Sbjct 1684689 GCGGTGTTGACCATGTCGAAGCCGACCGTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 1684630 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| || |||| || || || | ||| || |||||||||| ||| | Sbjct 1684629 GGGGAGCAGATGGGATTTCCCATTAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACC 1684570 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || | || || |||||| | | | || || || || | | ||| | ||||| Sbjct 1684569 ATTGTTTCCCCAAAGATGCCGTTATGTCTGGGCTTCTCCACCAGCAGGCCCGGGTAGAAC 1684510 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || |||| || || || | |||| | | ||||| || || ||||| ||| Sbjct 1684509 TCCACAGCATCCACGTGCCCGTACAGCTCCTCCAGCACCGCAGCCATTTCTTTCTCCCCT 1684450 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 9754 TCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTC 9813 |||||| |||| | ||||| | | ||| || |||||||| || | ||||||||| | Sbjct 1682985 TCGTCATCCCAGTGTGGGTGGACCTCTTTCAGCACATCGCACACACGGTTGTGTTCGCGG 1682926 Query 9814 AGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACT 9873 ||||||||||||||||||||||| | ||| || || | ||||| | || | || || Sbjct 1682925 AGCCATATGGTGGCGTACATCATCAGACCAGGGACCAGGCCAAATGCCTCGTGGCCGACG 1682866 Query 9874 GCAAAGCG 9881 || ||||| Sbjct 1682865 GCGAAGCG 1682858 >seq111 Length=2041907 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || ||||||||||| |||||||| | || |||||||| ||| | | || Sbjct 111297 TCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTTCCAAGCAGG 111238 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 ||||||| ||||| ||||| |||| ||| | |||||||| || || |||||| ||| Sbjct 111237 CCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATGGCATTAGGA 111178 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142 || ||| || | || | ||| | ||| | ||| | || || | ||| |||||||| Sbjct 111177 CGGATTTTCTCTAGCATTATGCCTGGGTAAAATTCCAGGGCGTCTATGTCACCATAGAGC 111118 Query 9143 GCTTCCAA--CTCGG 9155 |||| || ||||| Sbjct 111117 TCTTCTAAACCTCGG 111103 >seq47 Length=4508581 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || || || || || || || | || || ||||||||||| |||||||| |||| ||| Sbjct 426143 TTTACTATTTCAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAG 426084 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || || ||| ||| ||| ||||| | ||| || || || |||| ||| | ||||| Sbjct 426083 CATATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTT 426024 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || ||||| || | || | ||| || | | ||||| | ||| | ||| | | Sbjct 426023 TCTCCAAATATGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGA 425964 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 || || | ||| || ||||| |||| | || |||||||||| Sbjct 425963 GCGTCAATGTCACCGTAGAGCTCTTCGAGGTCTCGTGCTATCTCCT 425918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723645684986600