Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq38 179 5e-40 seq29 91.5 2e-13 seq89 86.0 8e-12 seq13 86.0 8e-12 >seq38 Length=4945250 Score = 179 bits (198), Expect = 5e-40 Identities = 834/1298 (64%), Gaps = 28/1298 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 1347666 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1347607 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || | || || |||||||| | | || || ||| Sbjct 1347606 GCCGTGGGCATCGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 1347547 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 || || | |||||| | | | ||| | | ||||||||| || ||||||| Sbjct 1347546 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGA 1347487 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || || | | | ||||| || || | |||||||| | ||| | | |||| Sbjct 1347486 ATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGC 1347427 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 ||| ||||||| || | || || | ||||||||||||||| || | || | || Sbjct 1347426 TCGCAGCTCGCTTCCAAAGCGGCATAATACATTGTCTCAAAGATCTGGATGTTGA--GCA 1347369 Query 116203 -TTG-GCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCT 116259 ||| |||||| | ||||| | || | ||| || || || |||| || | || Sbjct 1347368 GTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGCCAATCCC 1347310 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 116319 ||||| |||| || || || | || | ||| || ||| | | || ||||| || Sbjct 1347309 TGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG 1347250 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || | ||||||||| | || | || || | || || || | ||| Sbjct 1347249 TAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG-ATGC 1347191 Query 116380 AGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 116438 |||| || ||| || | || ||| |||| ||| | || |||| || Sbjct 1347190 CAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGA 1347134 Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498 |||||||| || || | ||| ||||| ||||||||| | |||||||| || | Sbjct 1347133 GGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAG 1347074 Query 116499 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558 || | ||| |||||||||| |||| || || ||| |||| || ||||| || Sbjct 1347073 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTT 1347014 Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT- 116617 ||||| ||| || |||||||| || || || || |||| || || || | ||||| | Sbjct 1347013 GTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTG 1346954 Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCT 116677 | | | || || || || | | ||||||| ||| || | |||||||| | | Sbjct 1346953 CTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTT 1346895 Query 116678 CAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGAC 116736 ||||||| || ||| |||| ||| ||||| || | | ||||| | || ||| Sbjct 1346894 CAAACTCCTCCCCC-CAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGAC 1346836 Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796 || | | ||| |||||||||||||||||||| |||||||| || || |||| Sbjct 1346835 CAGTCTGTGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAC 1346776 Query 116797 AGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 116855 | |||| || ||| || | | ||| || || || ||||| |||||| | Sbjct 1346775 AAGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGAAAGTCGAA 1346717 Query 116856 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGACCAG 116911 | ||| |||||| || |||||||||| |||| | || ||| | | || Sbjct 1346716 CACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCC- 1346658 Query 116912 CCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAG 116971 |||| | ||||| | ||| || ||| | || | | |||||| | || || | | Sbjct 1346657 CCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGG 1346598 Query 116972 ATTGGCCATTTGTCCCC-CGAATACGAGACTTGTTGGCTCTGA--CATCGTGGATGTGCA 117028 | ||| || || || ||| | | || || ||| | || | || || || Sbjct 1346597 AACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGT-GGATCTAATGCAGC-TGACTGC-CA 1346541 Query 117029 TACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCC 117088 ||||| || || || | || ||||| | ||||| | | | || || ||||||||| Sbjct 1346540 CGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCC 1346481 Query 117089 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 117148 | ||||| |||| |||| | |||| ||||||||||| |||| || ||||| | Sbjct 1346480 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGG 1346421 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 | ||||| ||||||||||| || | |||||| ||||| Sbjct 1346420 TTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC 1346383 >seq29 Length=6224470 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 1441025 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1440966 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||||| || || || ||||| ||||||||||||||||||||| Sbjct 1440965 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACA 1440916 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 1451402 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1451461 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||||| || || || ||||| ||||||||||||||||||||| Sbjct 1451462 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACA 1451511 >seq89 Length=2585884 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||| ||| | | ||||||| ||||||| ||| ||||| ||||| Sbjct 776525 TAGATGTTGCTGGTGTATGCCTCGATGGACTCATTATTACCCAGGATCTGGGCAGTGGAT 776584 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || | || || ||||| || Sbjct 776585 GCTGTGGGCATTGGGGACAAAAGCAGGCTATT 776616 >seq13 Length=10688992 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||||| || || ||| ||| || || ||||| || |||| ||||| Sbjct 6295551 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCT 6295492 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||| | || ||| |||||| |||||||||||||| || |||||| Sbjct 6295491 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 6295442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613437421224840