Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq38 170 3e-37 seq89 89.7 8e-13 >seq38 Length=4945250 Score = 170 bits (188), Expect = 3e-37 Identities = 348/509 (68%), Gaps = 6/509 (1%) Strand=Plus/Minus Query 204103 GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAAC-C 204161 ||| ||||| |||| || ||||| || || ||||||| |||||||||| | | Sbjct 1347790 GATGGAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACATGCCCCTCTC 1347731 Query 204162 TGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTC 204221 || |||| || | |||||||||||||| ||||||||| || || || ||||||| | Sbjct 1347730 TG-TCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGC 1347672 Query 204222 GGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGG 204281 ||||| | | |||| | ||| | | |||| | |||||||||||| | ||||| |||| Sbjct 1347671 GGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGG 1347612 Query 204282 TGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCC 204341 || |||||||||||| || | ||| |||||| ||| | ||| || | ||| || | Sbjct 1347611 TGGAGGCCGTGGGCATCGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCT 1347552 Query 204342 TGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACT 204401 | |||||| ||||||| || | | || || ||||||||||| ||| Sbjct 1347551 TCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACT 1347492 Query 204402 GAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAG-GCTGATCCTCTTCT 204460 | | ||||| | ||| || || ||| | ||||||| ||| | || || ||| | Sbjct 1347491 GGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGA-GCTCGGCG 1347433 Query 204461 GCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTT 204520 ||||||| ||| || ||| ||| ||| ||||| |||||||||||||| | | || Sbjct 1347432 GCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATTGTCTCAAAGATCTGGATG-TT 1347374 Query 204521 AATCTGGCG-GCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAA 204579 | | | | ||||| | | ||||| | || || | | || | || ||||| Sbjct 1347373 GAGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATAAGGATGAAGGCATCAGCCAA 1347314 Query 204580 GCCCTGCACTCCGATTCCCAACGGTCTGT 204608 ||||| || |||||||| | ||| |||| Sbjct 1347313 TCCCTGGACCCCGATTCCTATCGGCCTGT 1347285 >seq89 Length=2585884 Score = 89.7 bits (98), Expect = 8e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | ||||||| | ||||| | ||| || || || |||||||| Sbjct 776009 CTTCCAGCCATAGAAGTGCATGCTACTAAGTTTTCCATAGTTTGGCTCAGCAATGTGAAT 776068 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| || |||||||||||||| ||| | | | |||||||| ||||| |||| | || Sbjct 776069 GTTAAGCGACTGGCTTTGGTCAATGTATGCACCACGATCTGCTGCCATCTTGAGGACCGT 776128 Query 204034 CTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||| || || |||||||| || || Sbjct 776129 CTTCTGGGAGATTTCCCACACAGTTTT 776155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795064761035440