Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq92 127 2e-24 seq65 127 2e-24 seq29 120 3e-22 seq13 91.5 1e-13 >seq92 Length=2575742 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| | || || ||| ||| Sbjct 2564198 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2564139 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| || || || || ||||| | ||||| Sbjct 2564138 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCACCTGACCA 2564080 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 2564079 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 2564020 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || ||| | || |||||| | || || ||| Sbjct 2564019 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGGC 2563971 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 2563970 ATGCAGATCTTGGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 2563911 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| || || || || ||||| | ||||| Sbjct 2563910 GACACCATTGAGAACATCAAGGCTAAAATCCAGGATAAGGAAGGCATTCCACCTGACCAG 2563851 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | | ||||| |||||| | || | ||||||||| ||||||||| Sbjct 2563850 CAGAGGCTGATCTTTGATGGCAAGCAGCTGAAAGATGGCCGCACCCTCTCTGACTACAAC 2563791 Query 38424 ATCCAAAAGGA 38434 ||||| || || Sbjct 2563790 ATCCAGAATGA 2563780 >seq65 Length=3759856 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||| ||||| || || || ||||| || || || || |||||||| |||| || ||| Sbjct 3001349 AAAACATGCAGATCTTTGTGAAAACCCTAACTGGTAAGACCATCACTCTCGAGGTTGAGC 3001408 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 ||| |||| | | | | | || | ||||||| || || || || |||||| ||| Sbjct 3001409 CCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCG 3001468 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || ||||| |||||||| || | |||||||| ||||| Sbjct 3001469 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACT 3001528 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| | || || || | || |||||| | || || ||| Sbjct 3001529 ACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTCAGGGGTGGC 3001581 >seq29 Length=6224470 Score = 120 bits (132), Expect = 3e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| |||| Sbjct 1440399 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 1440340 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||||| | ||| |||| | ||||||| || |||||||||||| |||||| Sbjct 1440339 AAGTAGCGCTCTTCGTCCTTCATGGCATCCCAGTGCTGCAGGTCCTTGGACAGATCCACC 1440280 Query 133399 T 133399 | Sbjct 1440279 T 1440279 Score = 120 bits (132), Expect = 3e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| |||| Sbjct 1452028 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 1452087 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||||| | ||| |||| | ||||||| || |||||||||||| |||||| Sbjct 1452088 AAGTAGCGCTCTTCGTCCTTCATGGCATCCCAGTGCTGCAGGTCCTTGGACAGATCCACC 1452147 Query 133399 T 133399 | Sbjct 1452148 T 1452148 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| |||||| ||| |||| ||||||||| ||||| | || | Sbjct 1441025 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1440966 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||||||||| |||||| ||||||| ||||| || || || || | Sbjct 1440965 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 1440906 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| |||||| || Sbjct 1440905 CCACCACGCGCTCCCC 1440890 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| |||||| ||| |||| ||||||||| ||||| | || | Sbjct 1451402 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1451461 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||||||||| |||||| ||||||| ||||| || || || || | Sbjct 1451462 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 1451521 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| |||||| || Sbjct 1451522 CCACCACGCGCTCCCC 1451537 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 ||| |||||||| || || | ||||| |||||||| | ||||||||||||||| ||| Sbjct 1451833 GTACGTGTCGATCAGCAGGCTG--TACATCTCCGAGTGGATGTTCTCCATGGCGATCTGA 1451890 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || ||||| || ||||| ||||| |||||||||||| || ||| ||||| ||| Sbjct 1451891 AAACCGTAGAAACACCGGGCCTCCGTCACCTGCACTTCCTGCATGAAGCGCTCCACC 1451947 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/117 (78%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 ||| |||||||| || || | ||||| || ||||| | ||||||||||||||| ||| Sbjct 1440594 GTACGTGTCGATCAGCAGGCTG--TACATCTCTGAGTGGATGTTCTCCATGGCGATCTGA 1440537 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || ||||| || ||||| ||||| |||||||||||| || ||| ||||| ||| Sbjct 1440536 AAACCGTAGAAACACCGGGCCTCCGTCACCTGCACTTCCTGCATGAAGCGCTCCACC 1440480 >seq13 Length=10688992 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCG 133453 |||||||||| |||||||| || || |||| ||| | ||||||||| |||| ||||| Sbjct 6293364 CCACCTCCTCCACGGTCCAGAAAGAGGCCTGGGCCTGTTTGTACATCTTCCAGATGTCTC 6293305 Query 133454 AATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || || ||||||||||| |||||||| | ||||| || || | ||| || || Sbjct 6293304 GGTACTGGATGGGAAAAATGACAAACCGCCTTGGGTTCTCTCGGAGCAGAGGTTC 6293250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500115911596160