Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq38 161 1e-34 seq13 86.0 7e-12 seq89 82.4 9e-11 >seq38 Length=4945250 Score = 161 bits (178), Expect = 1e-34 Identities = 560/855 (65%), Gaps = 19/855 (2%) Strand=Plus/Minus Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || |||| || |||| ||||||||| ||| ||| ||||| |||||||| | ||| Sbjct 1347144 AGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATT 1347085 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 || || || | |||| | ||| || || |||| ||||| ||||| ||||| ||||| Sbjct 1347084 TCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTG 1347025 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639 || ||||| ||||||| |||||| |||||||| || || ||||| |||| || ||||| Sbjct 1347024 CAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCA 1346965 Query 106640 TTCCACACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGT 106698 | ||| | | | | | || || || || ||| |||||| ||| || | || Sbjct 1346964 TACCATAGCTGCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCCTCTCATATCTGGT 1346906 Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGAC 106757 |||||| ||||||||||||| ||| | || || || || || | | | |||| Sbjct 1346905 GTAGAGTTCTTCAAACTCCTC-CCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGAC 1346847 Query 106758 AGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 | | || ||||| | | ||| |||||||||||||| ||||| || ||||||| Sbjct 1346846 ACATCAGGGACCAGTCTGTGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACA 1346787 Query 106818 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCA 106876 ||| | || | || || || ||| || | || ||| || | | ||| Sbjct 1346786 GGGCGTAGAACAAGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTT-CTTCTTCAGCTCC 1346728 Query 106877 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTT 106932 || || || | | ||| |||||| ||||| || || | |||| | || ||| Sbjct 1346727 AGAAAGTCGAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTT 1346668 Query 106933 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 | | |||| | |||| ||||| ||||||||| ||| | || | | |||||| | Sbjct 1346667 TTGTTGCCC-CCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGAC 1346609 Query 106993 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCA--CATC 107049 | || | || || || || || || || | ||| ||| | || | Sbjct 1346608 GAGCCCGTTGGAACAGCCGTTGGTGCCGGCGAT-GTAGCTCCCCGTGGATCTAATGCAGC 1346550 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 || || || ||||| || || || | || ||||| | || || | | | || || Sbjct 1346549 -TGACTG-CCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGT 1346492 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | ||||| || | ||| ||| ||||| |||||| |||||||| ||||||| ||| Sbjct 1346491 GTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTG 1346432 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 107228 ||| || || ||||||||||||||||| || | ||||| ||||| || | | | Sbjct 1346431 CGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTG 1346373 Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCA 107288 ||| | || ||| ||||| | | | | || ||| ||| ||||| || | |||| Sbjct 1346372 ACAGCAGGTTGTAGGTCTCGATGGCTTTTTTGATATCTGTCCCATGGATTCCCACAGCCA 1346313 Query 107289 CACGCATAAACATGT 107303 | | ||| | ||||| Sbjct 1346312 CCCTCATGAGCATGT 1346298 >seq13 Length=10688992 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| || | | ||| || || || ||| ||| ||||| ||||| || |||| ||||| Sbjct 6295551 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCT 6295492 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| ||| || ||||| ||| ||||| || ||||||||||| || |||||| ||||| Sbjct 6295491 TCAGCCAGTAGATAGCAGCA-AATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAA 6295433 Query 117412 GCAAAAAGGCGCTC 117425 || | || ||||| Sbjct 6295432 GCCACAATCCGCTC 6295419 >seq89 Length=2585884 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||||||| || ||||| |||| ||| || || || || Sbjct 777452 CTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCC 777511 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||| | || ||||||||| | ||||| ||||||||||| | |||||| || || || Sbjct 777512 CAGATTTTGCTGATTACTCTTTCTATTGCAGGCATCCTTGTAAACCATGTATGGTGTACC 777571 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 || || ||||| |||| | || || | ||||| Sbjct 777572 AGTTTCTGTCTGCGACTCAATGATGGCGTACCACA 777606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589913697058760