Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq92 105 4e-18 seq65 98.7 6e-16 >seq92 Length=2575742 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 2564008 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 2564067 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || || || |||||| Sbjct 2564068 ATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTC 2564127 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || |||||| || | ||| ||||| || || ||||| ||||||||| Sbjct 2564128 TCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACA 2564187 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 2564188 AAGATCTGCAT 2564198 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| | |||||| || || |||| Sbjct 2563780 TCATTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTTCAGCTGCTTGCCATCAAAG 2563839 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || || || |||| | Sbjct 2563840 ATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATTTTAGCCTTGATGTTC 2563899 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || |||||| || | ||| ||||| || || ||||| |||||||| Sbjct 2563900 TCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACC 2563959 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 2563960 AAGATCTGCAT 2563970 >seq65 Length=3759856 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || || | ||||| ||| || ||||| ||||| ||||| || Sbjct 3001580 CCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3001521 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 3001520 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 3001461 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || || || ||||| || || || | |||| || ||||| Sbjct 3001460 ATGCCTTCCTTATCCTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCAA 3001403 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | |||| || ||||| || || || || || ||||||||||||||||| || Sbjct 3001402 CCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATGTT 3001351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324597600061272