Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq9 176 4e-38 seq341 111 1e-18 seq73 104 2e-16 seq81 86.0 5e-11 >seq9 Length=13701132 Score = 176 bits (194), Expect = 4e-38 Identities = 446/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || |||||||| || || || | || || | || || | ||||| | | ||||| | Sbjct 9627440 ACAGCTTGCGAGAGGGCAAAGAGGACCT-TATCCTCCAGCACTCAGGCAAGCATTGAGAT 9627498 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 || || | |||||||||||||||| | | || | || | ||||| ||||| || Sbjct 9627499 CGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTTTTGAGGA 9627558 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | || ||||| || || |||| ||| ||||| || ||| | ||| | Sbjct 9627559 GCTCAACTCAGATCTTTTCAGGGGAACACTTGGCCCAGTCGAGAAAGCCCTGCAGGATGC 9627618 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | |||||||||| | ||||||||||| || || ||||| || ||||||||||| Sbjct 9627619 CAAGCTGGATAAATCCAGGATTCATGAAATTGTCCTGGTCGGTGGCTCCACAAGAATTCC 9627678 Query 552152 TAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 ||||| | | | ||| || ||| ||| ||||| ||| | | || | || ||| Sbjct 9627679 CAAAATCCAGAAGCTCTTACAGGACTTCTTT-AATGGCAAAGACCTGAACAAGAGCATTA 9627737 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270 | |||||||| ||||| ||||| ||||| ||| | |||||||| || || || | | Sbjct 9627738 ACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTACAAGCAGCCATCCTCATGGGCGACA 9627797 Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 | || || | ||| || | | || | ||||| |||| || ||||| || | | Sbjct 9627798 CCTCAGAGAATGTCCAAGATCTGCTGCTGCTGGATGTCGCTCCCCTGTCTCTGGGCATTG 9627857 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390 |||| | || ||| ||||||| ||| || | |||| || || || || || Sbjct 9627858 AAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAATCCCCACAAAGC 9627917 Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450 | ||| | || || || || |||||||| || | | ||| ||||| | |||| Sbjct 9627918 AGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGTGTATTGATTCAGGTATTTG 9627977 Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510 |||| || ||| | || ||| | || || | || || | ||| | | ||||| Sbjct 9627978 AAGGCGAGAGAGCCATGACCAAATACAACAACCTTCTGGGCAAATTTGACCTCACAGGTA 9628037 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | ||||| ||||| || || || || || || || || || || || ||||||||||| | Sbjct 9628038 TCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGACGTAACATTTGACATCGATGCCAACG 9628097 Query 552571 GAATTTTGAATGT 552583 | ||| | ||||| Sbjct 9628098 GCATTCTAAATGT 9628110 >seq341 Length=187384 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || ||||| || || || || || || |||||||| || ||||||| Sbjct 7696 ATGCAGTTATCACAGTTCCAGCTTACTTCAACGATTCCCAGCGTCAAGCCACCAAAGATG 7637 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| |||||||| || || || |||||||| ||||||||||| || Sbjct 7636 CTGGGGCCATCTCTGGCCTTAATGTACTGCGCATCATCAATGAGCCTACTGCTGCAGCTA 7577 Query 550518 TTGCATATGGACTTGATAA 550536 |||| |||||||| || || Sbjct 7576 TTGCTTATGGACTGGACAA 7558 >seq73 Length=3182834 Score = 104 bits (114), Expect = 2e-16 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || || || || || || |||||||| || ||||| || || || |||| Sbjct 2732561 ATGCTGTAATCACAGTGCCCGCTTACTTCAATGACTCTCAGCGTCAGGCCACAAAGGATG 2732502 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| ||||||||||| || || |||||||| || ||||| ||||| Sbjct 2732501 CTGGCACTATCTCTGGCCTTAATGTTCTGCGCATCATCAATGAGCCCACTGCAGCTGCCA 2732442 Query 550518 TTGCATATGG 550527 |||| ||||| Sbjct 2732441 TTGCTTATGG 2732432 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||||| | ||| | ||||| ||| | || ||||| || ||||||||||| Sbjct 2733305 ATGTCAAAGGGACCAGCAGTTGGTATTGATCTTGGGACCACCTACTCCTGTGTTGGTGTG 2733246 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | || |||| ||||||||||||||||||||||| || || ||||| || || || | Sbjct 2733245 TTCCAGCATGGCAAAGTTGAAATTATTGCCAATGACCAGGGCAACAGGACCACACCCAGT 2733186 Query 550097 TATGTTTCTTTCACGGAAACTGA 550119 ||||| | ||||| || || || Sbjct 2733185 TATGTGGCCTTCACAGATACCGA 2733163 >seq81 Length=2813517 Score = 86.0 bits (94), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| || |||| ||| |||| ||||| ||||||||||||||||| || || ||||| Sbjct 2421285 TGTGTAGGAGTTTTTCAACATGGCAAAGTGGAAATTATTGCCAATGACCAGGGAAACAGG 2421226 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 ||||| || ||||||| | ||||| || || || | |||| |||||||| || Sbjct 2421225 ACTACACCCAGTTATGTTGCATTCACTGACACGGAGAGGCTGATTGGGGATGCAGCCAAG 2421166 Query 550145 TATCAAG 550151 | |||| Sbjct 2421165 AACCAAG 2421159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028814803843510