Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq38 232 1e-55 seq29 129 1e-24 seq13 114 2e-20 >seq38 Length=4945250 Score = 232 bits (256), Expect = 1e-55 Identities = 1037/1625 (64%), Gaps = 61/1625 (4%) Strand=Plus/Minus Query 221036 GAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCC 221095 ||||| ||||| | | |||| | | |||||| || |||| | ||||||||| | Sbjct 1347786 GAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACATGCCCCTCTCTGTC 1347727 Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 || | |||| || ||| ||| || | || || || ||||||||||||| | | Sbjct 1347726 AGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTG 1347667 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 || | ||| ||| | | |||||| ||||||||||||||||||||| || ||| | Sbjct 1347666 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1347607 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTT- 221274 || |||||||| || | || |||||| ||||| | || || || | ||| | ||| Sbjct 1347606 GCCGTGGGCATCGGGGACAGCAGCAGGCTGTTCCTCACGCC--ATGT-TTGGCGATCTTC 1347550 Query 221275 TC--TCAGCGTGTTCCAGTCACAGTGTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNN 221332 || ||||| |||||||| || |||||| Sbjct 1347549 TCCTTCAGCAGCTTCCAGTCCCA---------CAGGTCCGTTGGCGTCTTCTCCCACATG 1347499 Query 221333 NNNNNNNNNNNNNNNNNNTTAGACACCGGACTCCCATCGTACGACTCGTAGGGACCGTAC 221392 ||| |||||| || ||||||| ||| |||| ||| | Sbjct 1347498 TCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGC 1347439 Query 221393 AGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCAT 221451 ||||| | |||| | || || | || || | || || |||||||||||| Sbjct 1347438 TCGGCGGCCAGCTCGCAGCTC-GCTTCCAAAGCGGCATAATACATTGTCTCAAAGATCTG 1347380 Query 221452 CTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGAAGGGCATA-CGCAGCATCTGAAAGACG 221509 ||||||| | ||| |||||||| | | || || ||| |||| | ||| | Sbjct 1347379 GATGTTGAG-CAGTTGAGCCTCGGG-GCTTTCAAAGGGATAACGCATAAGGATGAAGGCA 1347322 Query 221510 TCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC--G 221567 || |||| |||||| || ||||| || || |||||||| | | |||| || | || | Sbjct 1347321 TCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGA--CCTCCTGG 1347264 Query 221568 CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTT 221627 ||||| ||| || || |||||| |||||| | ||||| | |||| |||| Sbjct 1347263 CTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCC------TGAC-- 1347212 Query 221628 TAACCACCTCGGTCA--GCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGG 221685 || || | ||||| | | | | || || || |||| || ||||| Sbjct 1347211 -AATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGC--TC----AGGGG 1347159 Query 221686 TTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTT 221745 | | | | | || || || || |||||| || || || ||||||||||||||| | Sbjct 1347158 TGACGTACATG--TTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCT 1347101 Query 221746 GGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTG 221805 || |||| | ||| || || || |||||||||||||||||||| ||||| | | || Sbjct 1347100 AGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTG 1347041 Query 221806 ATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTG 221865 || ||| | ||| || || ||||||| ||| | || || || || ||| Sbjct 1347040 GTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTG 1346981 Query 221866 AGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCT 221924 | | | | || | ||| || | ||| || ||||| | ||| || |||| Sbjct 1346980 CGACTCGATGATTGCATACCATAGCTG-CTGAGCCTTCACCACACGCTTCACCCTCCCCT 1346922 Query 221925 CGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGC 221984 | ||| |||| | ||| ||||| ||||||| || || | ||| ||||| | Sbjct 1346921 CCCTCT---CATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCC 1346865 Query 221985 CTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGA 222044 | || || ||| ||||||||||| ||||| |||||| | |||| || ||||| Sbjct 1346864 CGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCCACCCGCTTCATGA 1346805 Query 222045 AGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGT 222104 ||||||| ||||||||||| || | || | || |||| |||||||||||| || Sbjct 1346804 AGAGGTCAGGGATCCACAGGGCGTAGAACAAGTCCCTGGCTCGCTGCTCCTCCTTTCCCG 1346745 Query 222105 TGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGG 222164 |||| ||| |||| |||| ||| || || | || |||||| |||||||| || | || Sbjct 1346744 TGTTCTTCTTCAGCTCCAGAAAGTCGAACACATCGAAGTGCCAGGGCTCCAGGTACATGG 1346685 Query 222165 CCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGA 222224 | | |||||||||| |||||||| |||||||| || | | | |||| | | Sbjct 1346684 CGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAA 1346625 Query 222225 TGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTA-CGCACCG 222283 | | | || || || |||||||| | ||||||||||| ||||| | | ||| Sbjct 1346624 CCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCG 1346565 Query 222284 CCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCG 222343 || || | | ||| | | || ||| || || ||||| ||| ||||| | |||| Sbjct 1346564 -TGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCG 1346506 Query 222344 CAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAA 222403 || ||| || ||||| ||| ||||| || ||| ||||| | | ||||| || Sbjct 1346505 CAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAG 1346446 Query 222404 CAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTA 222463 || |||| ||| | || ||| | || || || || || || |||||| || Sbjct 1346445 CAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTG 1346386 Query 222464 AAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGT-TGTCCCCGTG 222522 || | | |||| ||| | ||| ||||| | | || | ||| | ||| ||| || Sbjct 1346385 AACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTTTTTGATATCTGT-CCCATG 1346327 Query 222523 AATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCT---CCACAGGACCCTTGGA 222579 || || || |||||| ||||| ||| || | || | || || || || Sbjct 1346326 GATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATT-GA 1346268 Query 222580 GCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTG-AGGTCAAAGT 222638 || |||||||| || |||||||||||||| |||||| ||||| ||| ||| | Sbjct 1346267 TCT--TTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAA-T 1346211 Query 222639 CTCTG 222643 ||||| Sbjct 1346210 CTCTG 1346206 >seq29 Length=6224470 Score = 129 bits (142), Expect = 1e-24 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| || ||||| || Sbjct 1440890 GGGGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCC 1440949 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 1440950 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 1441009 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 1441010 ATCAGCAGAGACGAGG 1441025 Score = 129 bits (142), Expect = 1e-24 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| || ||||| || Sbjct 1451537 GGGGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCC 1451478 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 1451477 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 1451418 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 1451417 ATCAGCAGAGACGAGG 1451402 >seq13 Length=10688992 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| | || || ||||| |||||||| |||||||| ||| ||||| ||||| Sbjct 6295416 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 6295475 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || |||| |||||| ||| ||| |||| ||||| || || || |||||||||||| Sbjct 6295476 GCTATCTACTGGCTGAAGAAGAGGGGGCTAATGCCTGGCCTTAGCTACTCCAACGAGCTC 6295535 Query 25993 ATCAGCAGGGACGAGG 26008 || ||||||||||||| Sbjct 6295536 ATTAGCAGGGACGAGG 6295551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928739155514560