Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9 154 1e-31 seq341 120 2e-21 seq81 100 2e-15 >seq9 Length=13701132 Score = 154 bits (170), Expect = 1e-31 Identities = 321/471 (68%), Gaps = 8/471 (2%) Strand=Plus/Plus Query 474407 GACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATT 474466 || || || |||||||| || ||| ||||| ||||||| || || ||| |||||| Sbjct 9626741 GATCAGGGCAATAGAACCACTCCAAGCTATGTGGCTTTTACCGACACAGAAAGGCTTATT 9626800 Query 474467 GGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAA 474526 ||||||||||| || | |||| |||| || || ||| || || |||||||| ||| Sbjct 9626801 GGAGATGCTGCCAAGAACCAAGTTGCAATGAACCCCAATAACACAATCTTTGATGCCAAA 9626860 Query 474527 AGATTGATTGGTCGTAATTTTGATGATACCACT-GTCCAATCTGATATGCGTCATTGGCC 474585 | ||||||| | || ||| |||| ||| | || || || || ||| | ||||| Sbjct 9626861 CGGCTGATTGGAAGAAAGTTTAATGA-CCCAGTCGTACAGTCCGACATGAAGCTCTGGCC 9626919 Query 474586 TTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCAATACACGCAGGTGAA 474643 ||| |||||||| | | | ||| || || | | || | |||||| ||| || Sbjct 9626920 TTTCAAGGTGATTGACGATAATGGAAAGCCCAAAGTCCAGGTGGAATACA--AAGGGGAG 9626977 Query 474644 ACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACC 474703 || || ||| | || || ||||||| || ||||| | | |||||||| | | Sbjct 9626978 ACCAAGGCATTCTATCCTGAGGAAATTTCCTCCATGGTCCTGGTTAAAATGAAGGAGATA 9627037 Query 474704 GC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTT 474762 || ||| | || || |||||| || | | ||||| || || || ||||| ||||| Sbjct 9627038 GCTGAG-GCCTACCTGGGACAAAGGGTGTCAAACGCAGTCATCACAGTGCCAGCTTATTT 9627096 Query 474763 TAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTT 474822 || || || || | ||||| || || ||||| || || | || || |||||| | Sbjct 9627097 CAACGACTCACAGAGACAAGCTACGAAGGATGCTGGGGTGATCTCTGGACTAAATGTTCT 9627156 Query 474823 ACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 | || |||||||| || |||||||| || |||| ||||| || ||||| Sbjct 9627157 GAGGATCATTAATGAGCCCACAGCAGCAGCCATTGCATATGGCCTGGATAA 9627207 Score = 140 bits (154), Expect = 2e-27 Identities = 416/627 (66%), Gaps = 16/627 (3%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| | || ||||| ||||| |||||||||| | | || || |||||||| | Sbjct 9627492 TTGAGATCGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTT 9627551 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT-C 475666 |||| || | || ||||| || || |||| ||| || || || ||| || | Sbjct 9627552 TTGAGGAGCTCAACTCAGATCTTTTCAGGGGAACACTTGGCCCAGTCGAGAAAGCCCTGC 9627611 Query 475667 AGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 || ||| | || || || ||||| || | | ||||||||||| || || || || || || Sbjct 9627612 AG-GATGCCAAGCTGGATAAATC-CAGGATTCATGAAATTGTCCTGGTCGGTGGCTCCAC 9627669 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATG 475784 ||||||||| ||||| |||| ||| || | | |||||||| ||| | | || Sbjct 9627670 AAGAATTCCCAAAAT-CCAGAAGCTCTTACAGGACTTCTTTAATGGCAAAGACCTGAACA 9627728 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT-TTTA 475843 | || | || || ||||||||||| || || || || || || |||||||| || | | Sbjct 9627729 AGAGCATTAACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTACAAGCAGCCATCCTCA 9627788 Query 475844 TCAG-GTCA-ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTT 475901 | | | || ||| ||||| | | || | | || | || || |||| || | Sbjct 9627789 TGGGCGACACCTCA---GAGAATGTCCAAGATCTGCTGCTGCTGGATGTCGCTCCCCTGT 9627845 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || ||||||| | || || ||||||| ||| || | |||| || | | Sbjct 9627846 CTCTGGGCATTGAAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAA 9627905 Query 475962 TCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 |||| || | | ||| | | || ||||| || || ||||| || || |||| Sbjct 9627906 TCCCCACAAAGCAGACTCAGA--TCTTCTCCACATACTCAGATAACCAGCCAGGTGTATT 9627963 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || || | |||||||| || ||| | || ||| | || ||| || || | || Sbjct 9627964 GATTCAGGTATTTGAAGGCGAGAGAGCCATGACCAAATACAACAACCTTCTGGGCAAATT 9628023 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || |||||| ||||| |||||| |||| ||||| || || || || || ||||| Sbjct 9628024 TGACCTCACAGGTATCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGACGTAACATTTGA 9628083 Query 476140 TATTGATGCAAATGGTATTCTTAATGT 476166 || ||||| || || ||||| ||||| Sbjct 9628084 CATCGATGCCAACGGCATTCTAAATGT 9628110 >seq341 Length=187384 Score = 120 bits (132), Expect = 2e-21 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||| ||| | ||||| || ||||||| ||||| | ||| | || || Sbjct 6481 TGAAGGTGAGAGAGCCATGACTAAGGACAATAACATCCTTGGGAAGTTTGAACTGACTGG 6422 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||||||||| |||||||| ||||| || || ||||| ||||||||||| Sbjct 6421 TATTCCACCTGCTCCCAGAGGGGTTCCTCAGATTGAGGTGACCTTTGACATTGATGCAAA 6362 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 6361 TGGCATTCTCAATGTGTCTGC 6341 >seq81 Length=2813517 Score = 100 bits (110), Expect = 2e-15 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||||||||| | || ||||| ||| ||||||| |||| ||| |||| ||| Sbjct 2421318 GCAGTTGGTATTGACCTGGGCACTACCTACTCCTGTGTAGGAGTTTTTCAACATGGCAAA 2421259 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| || || || || ||||| |||||| | || ||| Sbjct 2421258 GTGGAAATTATTGCCAATGACCAGGGAAACAGGACTACACCCAGTTATGTTGCATTCACT 2421199 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || || || || ||||| ||||| || || | |||| Sbjct 2421198 GACACGGAGAGGCTGATTGGGGATGCAGCCAAGAACCAAG 2421159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267788899741652