Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq38 170 2e-37 seq89 91.5 2e-13 seq13 86.0 7e-12 >seq38 Length=4945250 Score = 170 bits (188), Expect = 2e-37 Identities = 566/862 (66%), Gaps = 19/862 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| || | || ||||| ||| ||| || | | | Sbjct 1346291 CCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCATGGGACAGATATCAAAAAAGCC 1346350 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | |||| | | || ||||| ||||| | || |||||||| Sbjct 1346351 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCTT 1346409 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||||||||| || || |||||| ||||||| |||||||| |||||| ||||| || Sbjct 1346410 CAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGA 1346469 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | ||| | || ||||| | || || | | | || || | ||||| || | || || Sbjct 1346470 CAGCATCGAGGGGATCTACGACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCCGG 1346529 Query 75451 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 75507 || ||||| || || || | || | ||| ||| | || || || || Sbjct 1346530 AGGGATTGGCGTGG-CAGTCA-GCTGCATTAGATCCACGGGGAGCTAC-ATCGCCGGCAC 1346586 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || || || | || | | |||||| | | || | ||| ||||||||| || Sbjct 1346587 CAACGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTA 1346646 Query 75568 TGTAAATCAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 ||| |||| | ||||| | ||| || || |||| | ||| |||| || |||| Sbjct 1346647 TGTTGATCAGG-GGGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGC 1346705 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 | |||| | | || || || ||| | | || ||| || | || ||| || Sbjct 1346706 ACTTCGATGTGTTCGACTTTCTGGAGCTGAAGAAG-AACACGGGAAAGGAGGAGCAGCGA 1346764 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 || || | || | |||||||||| || ||||| |||||||||||||| ||| | Sbjct 1346765 GCCAGGGACTTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAAC 1346824 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGG 75801 | ||||| || | ||||| | | | || || || || || | ||| Sbjct 1346825 AACACAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTGCTGGGGG 1346884 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 ||||||||||||| |||||||| | ||||| |||||| || | || ||| || Sbjct 1346885 -GAGGAGTTTGAAGAACTCTACACCAGATATGAGAGGGAGGGGAGGGTGAA-GCGTGTGG 1346942 Query 75862 ACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 || | | | | | ||| | || || || | || ||||| || || || || || | Sbjct 1346943 TGAAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGT 1347002 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 | ||| | ||||| ||||| || |||| |||||| ||||| ||||| |||| || |||| Sbjct 1347003 ACATGGTCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCA 1347062 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 || || || |||||||||||||| | |||||||| ||||| ||| ||| |||| Sbjct 1347063 AGTGCAGCAACCTTTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCGGTTT 1347122 Query 76041 GCAATTTGGCATCAATCGCCCT 76062 ||||| |||| || |||| || Sbjct 1347123 GCAATCTGGCCTCTGTCGCTCT 1347144 >seq89 Length=2585884 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| || ||||| |||||||| ||| ||||||||||||| || || | |||||| Sbjct 777586 TCGCAGACAGAAACTGGTACACCATACATGGTTTACAAGGATGCCTGCAATAGAAAGAGT 777527 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 || || | ||| |||| || ||||| | ||||| ||||| || || |||||||| Sbjct 777526 AATCAGCAAAATCTGGGCACCATCAAATCCAGCAATCTGTGCACAGAGATCGTAGAGTAC 777467 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 777466 ACGAGCAAAGATGAG 777452 >seq13 Length=10688992 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GC 65135 ||||| || | || ||||| |||||| || ||||||||||| || ||||| ||| || Sbjct 6295419 GAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATT-TGCTGC 6295477 Query 65136 TATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 ||| || ||| |||||||| |||| || ||||| ||||| ||| ||| || || || || Sbjct 6295478 TATCTACTGGCTGAAGAAGAGGGGGCTAATGCCTGGCCTTAGCTACTCCAACGAGCTCAT 6295537 Query 65196 TTCCCGAGATGAGG 65209 | | | || |||| Sbjct 6295538 TAGCAGGGACGAGG 6295551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596501747665120