Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 170 2e-36 seq220 167 3e-35 seq377 149 8e-30 seq2 134 2e-25 seq38 120 4e-21 seq29 98.7 1e-14 seq494 95.1 1e-13 seq83 95.1 1e-13 >seq8 Length=13932129 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 13272264 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 13272323 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | | ||||||| |||| | Sbjct 13272324 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCGAAGA 13272383 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 13272384 TGTCGTTAACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 13272443 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 13272444 GCACCTGCTTCAGCACCTTGTA 13272465 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 13256805 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 13256864 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | | ||||||| || | | Sbjct 13256865 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCAAAGA 13256924 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| |||||||||||||||| ||| | |||| |||||| || |||||||| Sbjct 13256925 TGTCGTTAACAAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATACCGGTGTCGGGGT 13256984 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 13256985 GCACCTGCTTCAGCACCTTGTA 13257006 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| ||| | ||| | |||||| | ||||||||| Sbjct 4852175 GCCGCCAACTATTTGGACATCAAAGGCCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 4852116 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 |||||||| ||||| | || ||||||||| | ||||| || |||||||| Sbjct 4852115 ATGATCAAAGGCAAAACCCCAGAGGAGATCAGGAAGACTTTCAACATCAA 4852066 >seq220 Length=664275 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || |||||||||||||||||||| | | | || Sbjct 458483 GCTTGGCCAGCTCACCGGGCAGCAGGAGCCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 458542 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | | ||||||| |||| | Sbjct 458543 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCGAAGA 458602 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||| || |||||||| Sbjct 458603 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATACCGGTGTCGGGGT 458662 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 458663 GCACCTGCTTCAGCACCTTGTA 458684 >seq377 Length=136998 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | || ||||||||| |||||||||||||| | | | || Sbjct 42219 GCTTGGCCAGCTCACCGGGGAGGAGCAGGCGCACTGCGGTCTGGATCTCCCTGGAGGTGA 42278 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| ||||||| || || ||||||| ||||||| |||| | Sbjct 42279 TGGTGGAGCGTTTGTTGTAGTGCGCAAGGCGAGATGCCTCGGCAGCGATGCGCTCGAAGA 42338 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | ||| |||||| || |||||||| Sbjct 42339 TGTCGTTGACAAACGAGTTCATGATGCTCATGGCTTTGGAGGAGATCCCGGTGTCGGGGT 42398 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| | ||||||||| Sbjct 42399 GAACCTGCTTCAACACCTTGTA 42420 >seq2 Length=19631327 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | || ||| || |||||||||||||| | | | || Sbjct 15842543 GCTTGGCCAGCTCACCGGGGAGAAGCAAGCGAACTGCGGTCTGGATCTCCCTGGAGGTGA 15842602 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||| || | | |||| || |||| | Sbjct 15842603 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCTTCAGCGGCGATACGCTCGAAGA 15842662 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | ||| ||||| || |||||||| Sbjct 15842663 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTAGACGAGATACCGGTGTCGGGGT 15842722 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 15842723 GAACCTGCTTCAGCACCTTGTA 15842744 >seq38 Length=4945250 Score = 120 bits (132), Expect = 4e-21 Identities = 274/421 (65%), Gaps = 0/421 (0%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| |||||| || ||||| |||||| || | | || ||||| |||||||||||| Sbjct 1347095 ACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGC 1347036 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | || |||| ||| || |||| || |||||| |||| ||||| || |||||| | Sbjct 1347035 TCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACT 1346976 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNN 1628341 ||| ||| || |||| | ||| | || ||| ||| | | | | |||| Sbjct 1346975 CGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCCCTCT 1346916 Query 1628342 NNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCT 1628401 ||||| || | || ||||||| | ||| ||||| | Sbjct 1346915 CATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGT 1346856 Query 1628402 CGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCAC 1628461 ||| |||||| | || |||||||| | || || | || ||| ||||||||| Sbjct 1346855 CGGCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCCACCCGCTTCATGAAGAGGTCAG 1346796 Query 1628462 ACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 1628521 ||||||| ||||| || | ||| | || || | ||||||||| || |||||| | Sbjct 1346795 GGATCCACAGGGCGTAGAACAAGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCT 1346736 Query 1628522 TGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 1628581 | || || || |||||| | ||| |||||| ||||||||||| ||| ||||||| Sbjct 1346735 TCAGCTCCAGAAAGTCGAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGC 1346676 Query 1628582 C 1628582 | Sbjct 1346675 C 1346675 Score = 114 bits (126), Expect = 2e-19 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 |||||| ||| | | | ||||| |||| ||||||| ||||||| | ||| || | Sbjct 1347746 TCCACATGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCC 1347687 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 |||||||||| ||||| |||||||||||| | ||| | ||||| | |||| |||||| Sbjct 1347686 CCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGC 1347627 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCAT 1627445 |||||||||| | || | |||||||||||| Sbjct 1347626 CCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 1347596 >seq29 Length=6224470 Score = 98.7 bits (108), Expect = 1e-14 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| | ||||| | |||||| |||| ||||||||||| ||||| | |||||| Sbjct 1441023 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 1440964 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 ||||| ||||||||| ||| ||||||||| ||||| ||||| || ||||||||| Sbjct 1440963 AGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACAGCGGCAAAG 1440907 Score = 98.7 bits (108), Expect = 1e-14 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| | ||||| | |||||| |||| ||||||||||| ||||| | |||||| Sbjct 1451404 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 1451463 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 ||||| ||||||||| ||| ||||||||| ||||| ||||| || ||||||||| Sbjct 1451464 AGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACAGCGGCAAAG 1451520 >seq494 Length=61172 Score = 95.1 bits (104), Expect = 1e-13 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| ||||| ||||||||||| |||||||||| || ||| | ||||| Sbjct 55669 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGCCACTTGGCTCTGCTCTGTGACAC 55610 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| |||||| || || ||||| |||| || |||||| |||||||| Sbjct 55609 CATGACCTGCCGAGGTCACCTGATGGCCATCACCCGTCACGGCATCAACCGC 55558 >seq83 Length=2783663 Score = 95.1 bits (104), Expect = 1e-13 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| ||||| ||||||||||| |||||||||| || ||| | ||||| Sbjct 2347105 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGCCACTTGGCTCTGCTCTGTGACAC 2347046 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| |||||| || || ||||| |||| || |||||| |||||||| Sbjct 2347045 CATGACCTGCCGAGGTCACCTGATGGCCATCACCCGTCACGGCATCAACCGC 2346994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106392493449383