Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq38 136 4e-27 seq65 109 5e-19 seq92 82.4 7e-11 >seq38 Length=4945250 Score = 136 bits (150), Expect = 4e-27 Identities = 960/1531 (63%), Gaps = 59/1531 (4%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | || |||||| || || | | || || || ||| |||||| | ||| | | Sbjct 1347706 GTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGC 1347647 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| | || |||||||| ||||| ||||| || |||| || || ||||| | || Sbjct 1347646 CTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACAG 1347587 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 || || |||| | || || ||| ||||| ||| | ||||||||| Sbjct 1347586 CAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCA 1347527 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 || || | || | || | |||||| |||||||| | || ||| ||| | || Sbjct 1347526 CAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGA 1347467 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||||||||||| || || || | ||| |||| |||| |||||| || | || Sbjct 1347466 GCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGC 1347407 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 |||| || || || || ||||| ||||||| | | ||||||| ||| || | Sbjct 1347406 GGCATAATACATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAA 1347347 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 || || | | |||| || || |||| || || || || | ||| | || | Sbjct 1347346 GGGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCT 1347287 Query 138921 ATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTT 138980 ||||||| || ||| | || |||| | || || ||||| | ||||| | || Sbjct 1347286 GTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTT 1347227 Query 138981 GTTTAAATTTCGCACGACCACCTTAGTC--GTATGCTTTAATCGTTCAAAATCGTATGTG 139038 ||| || || | || | || || ||| | |||| ||| || ||| || || || Sbjct 1347226 GTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCC--AATTTTTTAAAGTCATAAGTC 1347169 Query 139039 CCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCAC 139098 | | | | || ||||| ||| |||||| | | ||||| | ||||| Sbjct 1347168 CGCTCAGGG--GT----GACGT--ACA----TGTTGAGAGCGACAGAGGCCAGATTGCAA 1347121 Query 139099 ACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTG 139158 |||||||| ||||| | |||| ||||| ||||| | || | || || |||||| Sbjct 1347120 ACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTG 1347061 Query 139159 ATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATAC 139218 || || || | ||| || || ||||| || | ||| || ||||||||||| | ||| ||| Sbjct 1347060 ATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTAC 1347001 Query 139219 GGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCT----TG 139274 || || || ||||| || | ||| || | ||| | | || ||||| | Sbjct 1347000 GGCGTCCCGGTTTCTGTCTGCGACTCGATGA-----TTGCATA---CCATAGCTGCTGAG 1346949 Query 139275 TATTTGACGCACG--TAAAGTT--CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATC 139330 || | |||| | | | | || | ||| || | ||||||||| || || Sbjct 1346948 CCTTCACCACACGCTTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACT 1346889 Query 139331 GTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGC 139390 || || || ||| || || | || | | | |||||||| || ||||| | Sbjct 1346888 CCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTG 1346829 Query 139391 CGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGC 139450 ||| || || ||| ||||||| || || || ||||||| ||| | | ||| || | Sbjct 1346828 TGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAAGTCCC 1346769 Query 139451 GCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAG 139510 || || || ||| ||| |||| |||| | || || || || || || Sbjct 1346768 TGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGAAAGTCGAACACATCGA 1346709 Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGA 139567 |||||| || ||||| || ||||| | ||||| | | ||||| || ||||| | Sbjct 1346708 AGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAA 1346649 Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627 | | || | | || ||| | || | |||||| || | || ||| | | |||| Sbjct 1346648 CATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGT 1346589 Query 139628 TGGTGCTACGGATGGGACTGTTGCGAGCTC-----GGACGTCATGTA---CATTG--ATG 139677 |||||| || | || ||| ||||| ||| | ||| | | || | | Sbjct 1346588 TGGTGC--CG---GCGA-TGT----AGCTCCCCGTGGATCTAATGCAGCTGACTGCCACG 1346539 Query 139678 CCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACC 139736 || || || ||| | ||||||| || | |||||| || | | || ||||| || || Sbjct 1346538 CCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAAT-GCTTCAGCGTGTCGTAGATCCC 1346480 Query 139737 TCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGT 139796 |||||||| |||| ||| | || ||| ||||| || || ||||| || || Sbjct 1346479 CTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGT 1346420 Query 139797 GCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACATCAATTCGT 139855 || || || || || || ||||| ||||| || || | | |||| || | || Sbjct 1346419 TCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCT-GACAGCAGGTTGT 1346361 Query 139856 ACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCA 139915 | || |||||||| | ||||| | || ||||| || |||| || | ||| |||| Sbjct 1346360 AGGTCTCGATGGCTTTTTTGATATCTGTCCCATGGATTCCCACAGCCACCCTCATGAGCA 1346301 Query 139916 TATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGG 139975 | || || || || || || ||| | ||| ||| ||| || | ||| || | Sbjct 1346300 TGTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAG 1346241 Query 139976 TCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||||| |||||||| | | ||| |||||| Sbjct 1346240 TCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 1346210 >seq65 Length=3759856 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| ||||| ||||| || || || ||||| || || ||| Sbjct 3001354 ATGCAGATCTTTGTGAAAACCCTAACTGGTAAGACCATCACTCTCGAGGTTGAGCCCAGT 3001413 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| || || ||||| || || ||||| || Sbjct 3001414 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 3001473 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 3001474 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 3001533 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | || |||| Sbjct 3001534 ATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCG 3001568 >seq92 Length=2575742 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 2564198 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2564139 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| || || ||||| || || || || || Sbjct 2564138 GACACCATTGAGAACGTCAAGGCCAAA-ATCCAGGATAAGGAAGGCATTCCACCTGACCA 2564080 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | | || || || || Sbjct 2564079 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 2564020 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| || ||||| || || || || |||| Sbjct 2564019 CATCCAGAAGGAGTCCACCCTCCATCTTG 2563991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449846429771720