Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq92 145 5e-30 seq65 140 2e-28 >seq92 Length=2575742 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | |||||| || || | |||| ||||||||| ||||| ||||| || Sbjct 2563972 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2564031 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 2564032 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGA 2564091 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | ||||| |||||| | || | ||| ||| ||| || Sbjct 2564092 ATGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 2564151 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| || ||||||||||| ||||||||||||||| Sbjct 2564152 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 2564199 Score = 107 bits (118), Expect = 1e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 34780 GGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCC 34839 |||| ||| ||||| ||||| ||||| || ||| |||| |||| | ||| ||||| || Sbjct 2563773 GGTGGACTCATTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTTCAGCTGCTTGCC 2563832 Query 34840 GGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTT 34899 | |||||||| | |||||||| | || | || ||||| || | ||||| || Sbjct 2563833 ATCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATTTTAGCCTT 2563892 Query 34900 GACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGT 34959 || | | || | || ||| ||| || || | ||| |||||||| || |||||||| Sbjct 2563893 GATGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGT 2563952 Query 34960 CTTTACAAAGATCTGCATG 34978 ||| || |||||||||||| Sbjct 2563953 CTTCACCAAGATCTGCATG 2563971 >seq65 Length=3759856 Score = 140 bits (154), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | |||||| ||||||| |||| ||||||||| ||||| ||||| || Sbjct 3001580 CCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3001521 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 3001520 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 3001461 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | ||||| ||||| || || || | ||| ||| ||| | Sbjct 3001460 ATGCCTTCCTTATCCTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCAA 3001403 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | || |||||||| || || ||||| || ||||||||||||||| Sbjct 3001402 CCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATG 3001353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325656682602281