Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq92 131 3e-25 seq65 131 3e-25 seq224 89.7 1e-12 seq49 86.0 1e-11 >seq92 Length=2575742 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | |||||| || | || || || || || ||||| || || || ||||| Sbjct 2563972 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2564031 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 2564032 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGA 2564091 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || || || || || || || ||||| || ||| | || || || Sbjct 2564092 ATGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 2564151 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| || | ||||| ||||| |||||||| Sbjct 2564152 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 2564198 Score = 100 bits (110), Expect = 6e-16 Identities = 146/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 82606 AGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTT 82665 |||| || || || || ||||| || || || ||||| || | | || |||| || | Sbjct 2563767 AGTG-AGGGTGGACTCATTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTTCAGCT 2563825 Query 82666 GTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCT 82725 | || ||| ||||||| || || || || || || || || ||||||||||| || || | Sbjct 2563826 GCTTGCCATCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATTT 2563885 Query 82726 TTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 | || || | || ||||| || || | || || || |||| || || |||||||| | Sbjct 2563886 TAGCCTTGATGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAG 2563945 Query 82786 TCAACGTCTTTACAAATATCTGCAT 82810 | | ||||| || || |||||||| Sbjct 2563946 TGAGGGTCTTCACCAAGATCTGCAT 2563970 >seq65 Length=3759856 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | |||||| || | ||| || || || || ||||| || || || || || Sbjct 3001580 CCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3001521 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || ||||||||||| || || || || || || || Sbjct 3001520 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 3001461 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || || || || || ||||| ||||| || ||| | || || || Sbjct 3001460 ATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 3001401 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | || || ||||| |||||||| Sbjct 3001400 TCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCAT 3001354 >seq224 Length=664517 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| || || |||||||| || ||||||||||| || ||| | || || || || Sbjct 472027 CCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTGTCACTGGGCTCCACCTCA 471968 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| || ||||||||||| || || |||||||| Sbjct 471967 AGGGTGATTGTCTTCCCCGTCAACGTCTTCACGAAGATCTGCAT 471924 >seq49 Length=4459736 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 ||||||| || | ||||||||||| || || ||||| | || | | | || || || Sbjct 4417654 GATAGCCTCGGCTCTTTGGTGGTACTACATCTCCAAAGGAGTGGAGTTCCTGGACACTGT 4417713 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 ||||||||||| ||||| ||||| || || || || || | ||||| || ||||| | Sbjct 4417714 CTTTTTCATACTGAGGAAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTG 4417773 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAA 60310 || ||||| | | | ||| | || || |||||| || |||| || ||| Sbjct 4417774 CACCATGTTCATCCTCTGGTGGATTGGAATCAAATGGGTTCCCGGTGGACAA 4417825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981712737664561