Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq38 203 3e-47 seq65 132 5e-26 seq92 122 8e-23 seq89 104 2e-17 seq29 93.3 4e-14 >seq38 Length=4945250 Score = 203 bits (224), Expect = 3e-47 Identities = 973/1529 (64%), Gaps = 42/1529 (3%) Strand=Plus/Minus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||| | | || || | ||||||||| || | |||||| || || Sbjct 1347728 TCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGG 1347669 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | || | |||||||||||||||| ||||| ||||| | Sbjct 1347668 TGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 1347609 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT---TATTT 148413 ||||||||||| | | |||||| ||| | || ||| || ||| || | Sbjct 1347608 AGGCCGTGGGCATCGGGGACAGCAGCAGGCTGTTCCTCA---CGCCATGTTTGGCGATCT 1347552 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACT 148473 | |||||| | ||||||||| || || || ||| | |||||||||||||| Sbjct 1347551 TCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACT 1347492 Query 148474 GCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCG 148533 | |||||||| || | || ||| ||||||| || | ||| || | || | Sbjct 1347491 GGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGG 1347432 Query 148534 CCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA 148593 |||| ||||||||||| || | ||| | || || || ||||| || || |||||| Sbjct 1347431 CCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATTGTCTCAAAGATCTGGATGTTGA 1347372 Query 148594 GCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGC 148653 |||| ||| |||||| | || ||||| | | || || || || | | Sbjct 1347371 GCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATAAGGATGAAGGCATCAGCCAATC 1347312 Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCG 148713 |||| || || | || || |||| ||| ||||| || | || || | || Sbjct 1347311 CCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCG 1347252 Query 148714 GATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGT-AATTCT 148771 | |||| |||| |||||| | |||| ||||| || | || | || || || | | Sbjct 1347251 GGTAGTAGTTGATGTCGATAACCTTGTTCAAG-TTCCTGACAATTACTTTGGTCACGGAT 1347193 Query 148772 GCGCAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATAGA 148828 || || || ||| || || | ||| || | | ||| | |||| ||| Sbjct 1347192 GC-CAATTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGA 1347134 Query 148829 GGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAG 148888 ||| |||||||| || ||| ||| ||| | ||||||| ||||| || | ||| || Sbjct 1347133 GGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAG 1347074 Query 148889 ATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTT 148948 |||||||| ||||| ||||| |||| || |||||||| |||||||| || || || Sbjct 1347073 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTT 1347014 Query 148949 GTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACC---GATG 149002 ||| | ||||||||| || ||||| ||||| || | || ||| | || Sbjct 1347013 GTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTG 1346954 Query 149003 CAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAG 149062 | | ||| | | ||| ||| | | | |||||| ||| ||| || || || Sbjct 1346953 CTGAGCCTTCAC---CACACGCTTCAC---CCTCCCCTCCCTCTCATATCTGGTGTAGAG 1346900 Query 149063 CCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAG 149122 || ||| |||| || |||| || || || |||||||| | | ||| ||||| || Sbjct 1346899 TTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAG 1346840 Query 149123 CGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTA 149182 ||||| | || | ||| |||||||| || || || || | ||| || ||||| Sbjct 1346839 GGACCAGTCTGTGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTA 1346780 Query 149183 CATGAGGTCGCGCGCCTTGCAG-TCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGC 149241 | | ||| | | || || | || || ||| |||| ||| | || | | Sbjct 1346779 GAACAAGTC-CCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGAAAGT 1346721 Query 149242 TGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC----CTTGCGCTTG 149297 ||| | || |||||| ||||| | ||||| |||| ||||| ||| | ||| Sbjct 1346720 CGAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTG-TTG 1346662 Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGT--TAAACACTCGAACCATAGGTTCAATGC 149355 || ||||| || || | ||| | |||||| ||||| ||| | ||| || | | | Sbjct 1346661 CCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTC--AACATTGGGACGAGCC 1346604 Query 149356 CACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGT 149415 | ||| | |||||| || | ||| || || | || | | || Sbjct 1346603 CGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTG 1346544 Query 149416 TGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGA 149475 ||||| || || ||| | | || |||||| ||||| | ||||| ||||| Sbjct 1346543 CCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGA 1346484 Query 149476 TGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAAC 149535 | |||||||||||||| |||||||| ||||| ||||| | ||| ||||| Sbjct 1346483 TCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGT 1346424 Query 149536 GCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCT 149595 || || || ||| | ||| ||| |||||| || || | |||| || || | Sbjct 1346423 TGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGT 1346364 Query 149596 CGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCA 149655 ||| | ||||| | | || || |||||||| || | || || | ||| | Sbjct 1346363 TGTAGGTCTCGATGGCTTTTTTGATATCTGTCCCATGGATTCCCACAGCCACCCTCATGA 1346304 Query 149656 GCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGTAGCCGTTTT 149712 |||| |||||||| ||||| || |||||| ||| || || |||| |||| | | Sbjct 1346303 GCATGTGCTGCGGACGCTCAGCTACTTTG---CCATTGATCTTTAGCAGGTAGGAGCGCT 1346247 Query 149713 CTAGTGTCTTGTAGCCAAAGTACTTGTAG 149741 | || |||||| |||||||| | |||||| Sbjct 1346246 CCAGAGTCTTGAAGCCAAAGAAGTTGTAG 1346218 >seq65 Length=3759856 Score = 132 bits (146), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| ||| | || || |||||||||| Sbjct 3001551 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAGCTGCTTGC 3001493 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||||||||| || ||||||||||| || ||| || || Sbjct 3001492 CAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCT 3001433 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || |||| |||| ||| || || || || | Sbjct 3001432 TGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTACCAGTTAGGG 3001373 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| || || ||||||||| Sbjct 3001372 TTTTCACAAAGATCTGCATG 3001353 >seq92 Length=2575742 Score = 122 bits (134), Expect = 8e-23 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || | ||| | | | || || |||| Sbjct 2563995 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCTTCCAGCT 2564053 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || || ||||||||||| || ||| | Sbjct 2564054 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATTT 2564113 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| | Sbjct 2564114 TGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAG 2564173 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | || || || || || |||||||||||| Sbjct 2564174 TGAGGGTCTTCACAAAGATCTGCATGGCT 2564202 Score = 111 bits (122), Expect = 2e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | ||| | | | || | |||||||||| Sbjct 2563773 GGTGGACTCATTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCTTTCAGCTGCTTGC 2563831 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | | | || |||| ||||||||| || || ||||||||||| || ||| || || Sbjct 2563832 CATCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATTTTAGCCT 2563891 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| ||||||| || || | ||||| ||| ||||| || || | Sbjct 2563892 TGATGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGG 2563951 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 2563952 TCTTCACCAAGATCTGCATG 2563971 >seq89 Length=2585884 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | ||||||||||||| ||||||| ||||| || | |||| Sbjct 777466 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGAT 777525 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 | ||||| || ||||| || |||||||| | |||||| ||| |||||||| ||||| Sbjct 777526 TACTCTTTCTATTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCG 777585 >seq29 Length=6224470 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||| || |||||||||||||| | |||| || |||| | |||| ||| Sbjct 1441011 ATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTCAGCCAGAAGATG 1440952 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||||| || |||||| ||||| | |||||||| ||||||||| |||| |||||| Sbjct 1440951 GCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCCACCACGCGCTC 1440893 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||| || |||||||||||||| | |||| || |||| | |||| ||| Sbjct 1451416 ATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTCAGCCAGAAGATG 1451475 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||||| || |||||| ||||| | |||||||| ||||||||| |||| |||||| Sbjct 1451476 GCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCCACCACGCGCTC 1451534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483365816926760