Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq38 149 6e-31 seq65 86.0 6e-12 >seq38 Length=4945250 Score = 149 bits (164), Expect = 6e-31 Identities = 956/1512 (63%), Gaps = 50/1512 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | |||||||| |||| ||||| || | | || | ||||| ||| | | | Sbjct 1347705 TTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCC 1347646 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| || || ||||| | || | Sbjct 1347645 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACAGC 1347586 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071 | || || | || || | ||| || ||||||| || || ||||||||| Sbjct 1347585 AGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTT-CCAGTCCCA 1347527 Query 147072 CATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACT 147131 || || |||||| | |||||||||||||||||| | || ||| | || Sbjct 1347526 CAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGA 1347467 Query 147132 GCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCGAGCG 147190 ||| || |||| ||| | ||| || | ||| ||| || ||||| || || | | Sbjct 1347466 GCCTTCGTACGTCTCATAGGTGCCGA-GCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAG 1347408 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | |||| || || || || ||| || |||| || | || || ||| || Sbjct 1347407 CGGCATAATACATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCA- 1347349 Query 147251 AAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 |||| ||| |||| ||| | |||||||| ||||| ||||||| |||| || || || Sbjct 1347348 AAGGGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGC 1347289 Query 147310 CGATGC----TTTTCGT--TGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCA 147363 | || | |||| | ||| ||||| | | || |||| |||| || Sbjct 1347288 CTGTGGCGCATGTTCGACCTCCTG-GCTTCTTCCACC-----GGGTAGTAGTTGATGTCG 1347235 Query 147364 ATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCA 147423 |||| |||||| | ||| | || | ||||| || | | | | ||| | || ||| Sbjct 1347234 ATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCA 1347175 Query 147424 TAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGAC 147482 ||||||| || | |||||| || ||| | |||| ||| ||||||||||| || Sbjct 1347174 TAAGTCCGCTCAGGGGTGACGTAC--AT--GTTGAGAGCGACAGAGGCCAGATTGCAAAC 1347119 Query 147483 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTAT 147542 ||| ||| || | |||||| |||||||| | ||| ||||||||||| || || Sbjct 1347118 CGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGAT 1347059 Query 147543 GACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 | |||| ||| ||||| ||||| |||| ||||| || |||||| ||| ||||||||| Sbjct 1347058 GGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGG 1346999 Query 147603 TCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGC--TC-G 147656 ||||| || |||| || | ||| | ||| || || | ||| || || Sbjct 1346998 CGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACC-AT--AGCTGCTGAGCCTTCAC 1346942 Query 147657 CACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTC 147716 ||| |||| | | ||||| | || || | ||| | |||||||| || Sbjct 1346941 CACACGCTTC---ACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTC 1346885 Query 147717 GCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATGTC 147773 || |||| || | || ||||| || | |||||||||||| ||||| ||| Sbjct 1346884 CCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTGTGTT 1346825 Query 147774 GTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC- 147832 || | | || || ||| || || || || | |||||| ||||| | | || | Sbjct 1346824 GTTC---TCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAAGTCCCT 1346768 Query 147833 -GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCG 147891 || | ||| ||||| ||| |||| |||| | || | | | | ||| Sbjct 1346767 GGCTCGCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGAAAGTCGAACACATCG 1346710 Query 147892 GCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCG 147948 ||||||||| || | ||| | ||| | || || | | || || ||||| || Sbjct 1346709 AAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCA 1346650 Query 147949 ACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCG 148008 |||| ||| | ||||||| | || | || ||| || | || ||| | | | |||| Sbjct 1346649 ACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCG 1346590 Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068 |||||| ||| | ||| || || || | | || |||||||| || Sbjct 1346589 TTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCT 1346530 Query 148069 CCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128 ||| | | || || ||| ||||||| || || |||||| || ||||||||| Sbjct 1346529 CCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTG 1346470 Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAG 148188 || | || | | | |||| || || ||| ||||| | ||||| || | Sbjct 1346469 TCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTG 1346410 Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATA 148248 || ||||| || ||||| || ||| | || | || || | || ||||| || Sbjct 1346409 AAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATG 1346350 Query 148249 GCGTCTTCGATGTC-GTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307 || | || ||| || ||| || || || |||| || || | ||||||||||||||| || Sbjct 1346349 GCTTTTTTGATATCTGTC-CCATGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 1346291 Query 148308 TCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACC 148367 || || || |||| |||||||| || || || || || || ||| | || Sbjct 1346290 ACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCC 1346231 Query 148368 AAAGTACTTGTA 148379 |||| | ||||| Sbjct 1346230 AAAGAAGTTGTA 1346219 >seq65 Length=3759856 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || |||||| ||||| || || | | Sbjct 3001547 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCA 3001488 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || || || |||||||| ||||| ||||| || | Sbjct 3001487 AAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACA 3001428 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || |||||||| || ||||| Sbjct 3001427 TTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTC 3001368 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 3001367 ACAAAGATCTGCATG 3001353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476556991433640