Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq220 188 1e-41 seq8 188 1e-41 seq377 179 5e-39 seq2 149 9e-30 seq38 118 2e-20 seq172 113 6e-19 seq29 89.7 7e-12 >seq220 Length=664275 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| | ||| ||| |||| ||||| Sbjct 458684 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGGT-----ATC-TCCTCCAAGGCCATG 458631 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | |||||| ||| Sbjct 458630 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCTGAGGCCTCCCGC 458571 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | |||||||||||||||||||| Sbjct 458570 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGG 458511 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 458510 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 458462 >seq8 Length=13932129 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 13272465 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 13272412 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| | | |||||| ||| Sbjct 13272411 AGCATCATGAACTCGTTCGTTAACGACATCTTCGAGCGCATCGCCTCTGAGGCCTCCCGC 13272352 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 13272351 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 13272292 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 13272291 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 13272243 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| | ||| ||| |||| ||||| Sbjct 13257006 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGGT-----ATC-TCCTCCAAGGCCATG 13256953 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||||| |||||||| | || ||||||| | | |||||| ||| Sbjct 13256952 AGCATCATGAACTCGTTTGTTAACGACATCTTTGAGCGCATCGCCTCTGAGGCCTCCCGC 13256893 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 13256892 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 13256833 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| |||||| || ||||||||||||| Sbjct 13256832 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCTGTGTCCGAGGGCACCA 13256784 >seq377 Length=136998 Score = 179 bits (198), Expect = 5e-39 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| |||||| |||| || |||||||| || ||||| Sbjct 42420 TACAAGGTGTTGAAGCAGGTTCACCCCGACACCG---GGATCTCCTCCAA--AG-CCATG 42367 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| ||||||| |||| Sbjct 42366 AGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCTGCCGAGGCATCTCGC 42307 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || |||| || |||||| ||| ||| ||| | | | |||||||||||||| |||||| Sbjct 42306 CTTGCGCACTACAACAAACGCTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTGCGC 42247 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || | | ||| || ||||||| ||||||||| || |||||||||| Sbjct 42246 CTGCTCCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 42198 >seq2 Length=19631327 Score = 149 bits (164), Expect = 9e-30 Identities = 170/227 (75%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| | ||| || ||| ||||| Sbjct 15842744 TACAAGGTGCTGAAGCAGGTTCACCCCGACACCGGT-----ATC-TCGTCTAAGGCCATG 15842691 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| || |||| | | || ||| ||| Sbjct 15842690 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGTATCGCCGCTGAAGCCTCCCGC 15842631 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | |||||||||||||| || ||| Sbjct 15842630 CTGGCCCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTTCGC 15842571 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | | | ||| || ||||||| ||||||||| || |||||||| Sbjct 15842570 TTGCTTCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCAC 15842524 >seq38 Length=4945250 Score = 118 bits (130), Expect = 2e-20 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 262915 CATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATC 262974 |||||| || | ||| |||| || | | |||||||||||| | || | |||||| Sbjct 1347563 CATGGCGTGAGGAACAGCCTGCTGCTGTCCCCGATGCCCACGGCCTCCACCGCCCAGATC 1347622 Query 262975 CTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTC 263034 |||||||||| |||| | |||||| | ||| |||||||||||||| ||||| |||||| Sbjct 1347623 CTGGGCAACAACGAGTCCATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTC 1347682 Query 263035 TCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAA 263072 ||||| || ||| | ||||||| ||||||| |||| Sbjct 1347683 TCGGGGGAGTTTCAGATCGTCAACCCCCACCTGCTCAA 1347720 Score = 109 bits (120), Expect = 8e-18 Identities = 199/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||||| || | || || ||||| ||||| || || | | Sbjct 1346370 TGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGC 1346429 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 ||||| || ||||| ||| | | |||||||| || |||||||| ||||| | Sbjct 1346430 CGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGGATCTACG 1346489 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 ||||||| ||||| ||||| ||||||||||| | ||||| || || || | || | Sbjct 1346490 ACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCCGGAGGGATTGGCGTGGCAG--- 1346546 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | || |||| |||| | || |||||||||||| |||||||| Sbjct 1346547 -TCAGCTGCATTAGATCCACGGGGAGCTACATCGCCGGCACCAACGGCTGTTCCAACGGG 1346605 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || || ||| | | |||| ||| |||| ||||| || || || ||| Sbjct 1346606 CTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAG 1346656 Score = 89.7 bits (98), Expect = 7e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| || || ||| | | || | || ||||| ||||| |||||||||||| Sbjct 1346954 CAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGGTCTAC 1347013 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 || || ||| |||| || |||||||||||||| |||||||||| | || | ||| Sbjct 1347014 AAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCA-AGTGCAGCAA 1347072 Query 262210 CCTGTGCACCGAGATCGTCCAGT 262232 ||| ||||| || |||||| ||| Sbjct 1347073 CCTTTGCACGGAAATCGTCGAGT 1347095 >seq172 Length=1159537 Score = 113 bits (124), Expect = 6e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 724998 GACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAAC 725057 ||||| |||| ||||||| |||||||| ||||||||| | || |||||| ||| | Sbjct 1137621 GACATCTTCGAGCGCATCGCTGCCGAGGCCTCTCGCCTGGCCCACTACAACAAACGCTCC 1137562 Query 725058 ACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCC 725117 || ||| | | |||||||||||||| ||||||||| | | | ||| || |||||| Sbjct 1137561 ACCATCACGTCCAGGGAGATCCAGACCGCAGTGCGCCTGCTGCTCCCCGGTGAGCTGGCC 1137502 Query 725118 AGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||||||| || |||||||||| Sbjct 1137501 AAGCACGCCGTGTCTGAGGGCACCA 1137477 >seq29 Length=6224470 Score = 89.7 bits (98), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| | || || || || | ||||| || | || ||||| || ||||||||| Sbjct 1440487 CGCTTCATGCAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGTTTTCAGATCGCC 1440546 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || | ||| || ||||||||||| ||| |||||||||| Sbjct 1440547 ATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGGACCC 1440605 Score = 89.7 bits (98), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| | || || || || | ||||| || | || ||||| || ||||||||| Sbjct 1451940 CGCTTCATGCAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGTTTTCAGATCGCC 1451881 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || | ||| || ||||||||||| ||| |||||||||| Sbjct 1451880 ATGGAGAACATCCACTCGGAGATGTACAGCCTGCTGATCGACACGTACATCAAGGACCC 1451822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176933584726038