Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq65 131 2e-25 seq38 120 3e-22 seq92 89.7 5e-13 >seq65 Length=3759856 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| || ||||| || ||||| ||||| || |||||||||||| Sbjct 3001580 CCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3001521 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| ||||| |||| | |||||| ||||| || Sbjct 3001520 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 3001461 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| ||||| || | ||||| | || || Sbjct 3001460 ATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 3001401 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 |||||||| ||||| ||||| |||| ||||| || || || ||||| || Sbjct 3001400 TCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATGTT 3001351 >seq38 Length=4945250 Score = 120 bits (132), Expect = 3e-22 Identities = 890/1430 (62%), Gaps = 32/1430 (2%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || | || ||||| ||| || || || || || |||||||| || | || Sbjct 1346254 CTACCTGCTAAAGATCAATGGCAAAGTAGCTGAGCGTCCGCAGCACATGCTCATGAGGGT 1346313 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 ||| ||||| || || || ||| || | ||| | || || ||| | || |||| Sbjct 1346314 GGCTGTGGGAATCCATGGGACAGATATCAAAAAAGCCATCGAGACCTACAACCTGCTGTC 1346373 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || || ||| | || || || || ||| ||| || Sbjct 1346374 AGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGCCGCA 1346433 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| || || ||| |||| Sbjct 1346434 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGGATCTACGACAC 1346493 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 |||| |||||||| || ||||||| | ||| || || || || || | | Sbjct 1346494 GCTGAAGCATTGCGCCCTCATCTCCAAATCAGCCGGAGGGATTGGCGTGGCAGTCAGCTG 1346553 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | | ||| || ||| ||||| ||||||||| ||| ||| | | || Sbjct 1346554 CATTAGATCCACGGGGAGCTACATCGCCGGCACCAACGGCTGTTCCAACGGGCTCGTCCC 1346613 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAAGCGCAAA-- 7941 |||||| | || | ||| ||| | | ||| |||| || |||||||| || |||| Sbjct 1346614 AATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAGGGGGGCAA---CAAAAG 1346670 Query 7942 ----GGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAA 7997 |||||| ||||| || ||||||| |||||| || | | || | || | Sbjct 1346671 ACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGCACTTCGATGTGTTCGACTTTCTGGA 1346730 Query 7998 TCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGT 8056 ||| |||| ||| || || |||| ||| | || | |||| || ||| Sbjct 1346731 GCTGAAGAAGAACACGGGAAAGGAGGAGCAGC-GAGCCAGGGACTTGTTCTACGCCCTGT 1346789 Query 8057 GGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCC 8116 || | || || || || |||| ||| || | | || || | ||||| || ||||| | Sbjct 1346790 GGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAACACAGACTGGTCCCTGATGTGTC 1346849 Query 8117 CCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAAC 8176 | | ||||| | | | | || | |||||| || | |||| Sbjct 1346850 CGGCCGACTGCCCCGGGCTGGATGAGTGCTGGGGGGAGGAGTTTGAAGAACTCTACACCA 1346909 Query 8177 AATACGAACACGACGGCGCGTACG----TGCGGCAAGTGAAAGCGCGCGACCTGCACCGC 8232 ||| || || || | | | | ||| ||||| || | | || Sbjct 1346910 GATATGA----GAGGGAGGGGAGGGTGAAGCGTGTGGTGAAGGCTCAGCAGCTATGGTAT 1346965 Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 || || ||||| | || | |||||||| | |||||||||| | |||||||| || ||| Sbjct 1346966 GCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGGTCTACAAAGATGCCTGC 1347025 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| || ||||| || || |||||||||| |||||||| || ||| | ||| Sbjct 1347026 AACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAACCTTTGCACGGAA 1347085 Query 8353 ATTGTACAGTACAGCGCGC-CCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTT 8411 || || |||||| | || ||||| ||||| ||||||||||| || || || | | Sbjct 1347086 ATCGTCGAGTACA-CTAGCAAGGACGAGGTGGCGGTTTGCAATCTGGCCTCTGTCGCTCT 1347144 Query 8412 AAACGCGTTCGTTGATCGACGCTCA-AACACTTACGACTTTGAACAATTGAAAAACGCCG 8470 ||| || || || | || | ||||| |||||| || ||||| | ||| Sbjct 1347145 CAACATGTACG----TCACCCCTGAGCGGACTTATGACTTTAAAAAATTGGCA---TCCG 1347197 Query 8471 TG---CAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGG 8527 || |||| | || | || || | | || || |||| | || || ||| Sbjct 1347198 TGACCAAAGTAATTGTCAGGAACTTGAACAAGGTTATCGACATCAACTACTACCCGGTGG 1347257 Query 8528 AAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGG 8587 ||||||| | ||||||||||||||||| || | || | || || || || ||| Sbjct 1347258 AAGAAGCCAGGAGGTCGAACATGCGCCACAGGCCGATAGGAATCGGGGTCCAGGGATTGG 1347317 Query 8588 CCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACA 8647 | || || || | | |||| |||| ||||||| || || | ||||||||| Sbjct 1347318 CTGATGCCTTCATCCTTATGCGTTATCCCTTTGAAAGCCCCGAGGCTCAACTGCTCAACA 1347377 Query 8648 TAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAG 8707 | | || || || ||||||| | ||| || ||||| ||||| | || ||| | Sbjct 1347378 TCCAGATCTTTGAGACAATGTATTATGCCGCTTTGGAAGCGAGCTGCGAGCTGGCCGCCG 1347437 Query 8708 AATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACG 8767 | | ||||| || || |||||| ||| || | || || || | || |||| Sbjct 1347438 AGCTCGGCACCTATGAGACGTACGAAGGCTCGCCGGTGAGTAAGGGCATTCTCCAGTACG 1347497 Query 8768 ACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTG 8827 |||||||| | ||||| || ||||| | |||| |||| || || | Sbjct 1347498 ACATGTGGGAGAAGACGCCAACGGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCG 1347557 Query 8828 CTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTC 8887 | || || || | || ||| || || | |||||||| ||| | || || | Sbjct 1347558 CCAAACATGGCGTGAGGAACAGCCTGCTGCTGTCCCCGATGCCCACGGCCTCCACCGCCC 1347617 Query 8888 AAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 | || |||| |||||||| ||| | ||| | | ||| | |||| | ||| Sbjct 1347618 AGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACAAGCAACATCTAC 1347667 >seq92 Length=2575742 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| || || || || ||||| ||||| || ||||||||||| Sbjct 2563972 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2564031 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 2564032 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGA 2564091 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| ||||| || | ||||| | || || Sbjct 2564092 ATGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 2564151 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 2564152 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 2564198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505340917249480