Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq38 347 2e-90 seq89 111 2e-19 seq13 96.9 5e-15 >seq38 Length=4945250 Score = 347 bits (384), Expect = 2e-90 Identities = 1255/1950 (64%), Gaps = 35/1950 (2%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| |||||||||| ||||| || | || | || || || || || Sbjct 1347762 TTCTTCATCTCCTCATTCCACATGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 1347703 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| ||||| || | ||| | || ||||| || || || || || | || Sbjct 1347702 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 1347643 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || | || || Sbjct 1347642 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACAGCAGC 1347583 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | |||||| | ||| || || || || | ||||| ||||| || Sbjct 1347582 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1347523 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | ||| | ||| | ||||| || ||||| || ||||| | || || Sbjct 1347522 TCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCT 1347463 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || ||||| | || || | || || || || || || || || || | Sbjct 1347462 TCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCA 1347403 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 ||||| ||||| || || |||| | ||||| ||| || || | || || || ||| Sbjct 1347402 TAATACATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGA 1347343 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | ||| || || ||||| ||||||||||| ||||| || || || || || || Sbjct 1347342 TAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGG 1347283 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | | | || || || |||||| | || || || || || || |||| || || Sbjct 1347282 CGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTC 1347223 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA---TCGTCCA 69249 | || | ||| | |||||| |||| | ||| ||| ||| | || || Sbjct 1347222 AAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGCTCA 1347163 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || |||| || || || ||||| || ||||| ||||| || ||||| | Sbjct 1347162 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTC----GTC 1347107 Query 69310 TTTGCATATTGTATT-----ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGAT 69364 |||| || |||| | || || || || || || || || ||||| || ||||||| Sbjct 1347106 CTTGC-TAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGAT 1347048 Query 69365 TTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTT 69424 | ||||| || ||||| |||| ||||| || ||||| | || |||| || || |||| Sbjct 1347047 TCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTT 1346988 Query 69425 CAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC 69484 | |||| || ||||| || | | ||| | | ||| || | || ||| | Sbjct 1346987 CTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCC 1346928 Query 69485 GCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCA 69544 | ||| | |||||| || || || ||| || || || ||||| ||||||| Sbjct 1346927 TCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCA 1346868 Query 69545 ATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCA 69604 || || || || |||||||||| ||||| | | | || || || |||| Sbjct 1346867 GCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCCACCCGCTTCA 1346808 Query 69605 TAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTT 69663 | || || || || ||||| || || || || || || |||| || | || || ||| Sbjct 1346807 TGAAGAGGTCAGGGATCCACAGGGCGTAGAACAAG-TCCCTGGCTCGCTGCTCCTCCTTT 1346749 Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 || || || || || || || ||||| || | | ||| | ||||| || || || || Sbjct 1346748 CCCGTGTTCTTCTTCAGCTCCAGAAAGTCGAACACATCGAAGTGCCAGGGCTCCAGGTAC 1346689 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 || || | | | || |||| ||| || || |||||||| | || | || ||||| || Sbjct 1346688 ATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTG 1346629 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 || || |||| ||| || | | || || || || || || || | || || || Sbjct 1346628 TAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTC 1346569 Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 || | | | ||| || | | | || || ||||| || ||| ||||| || Sbjct 1346568 CCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGG 1346509 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 || ||| | |||| ||||| || || ||||| ||||| ||||| ||||| || || Sbjct 1346508 GCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 1346449 Query 69964 AAACAGCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 || ||||| |||| || | ||| | ||||| ||||| || | || || || ||||| Sbjct 1346448 AAGCAGCTGGACAGCTGCGGCCTGT-TGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTG 1346390 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTG 70082 |||||||| || || || ||||| ||||| || || || ||| || ||||| | Sbjct 1346389 GGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTTTTTGATATCTGTCCC 1346330 Query 70083 ATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATT 70142 ||| ||||| | || || | ||| | ||| ||||| || || || | ||| ||| Sbjct 1346329 ATGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATT 1346270 Query 70143 TATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 || || | |||||| || |||||||| || || ||||| ||||||| || || || Sbjct 1346269 GATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 1346210 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAAC 70262 ||| || || || || | || || || || || | | ||| || || Sbjct 1346209 TCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTC-----G 1346155 Query 70263 AGTAGGT-----GAGATAATCG--GAG-ATCGTTTACCATTTTTAGGATTAACATAGTTG 70314 ||| || || || || | ||| ||||| || || || | |||||| Sbjct 1346154 AGTGTGTCTTTCGAAATCATGGACGAGTGGCGTTT---GTTCAGGGGGTTGATGTAGTTG 1346098 Query 70315 AATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATG 70374 | | || ||||| || || || || | || || || || ||||| | || || | | Sbjct 1346097 TACAGGTCCTCCATGACTTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTAGAGACG 1346038 Query 70375 GCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATT 70434 || || | || || || || || |||||||| | | || || ||| || || || Sbjct 1346037 GCGATGCGTGCGGCGAGGATGGCGTAGTCAGGGTACTTGGTTGTGAGAGTGGCAGCAATC 1345978 Query 70435 TCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACT 70494 ||||| || | ||| || | || | ||| || || ||| | || | || || || || Sbjct 1345977 TCCGCCGCCAGCGTGTCAAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACC 1345918 Query 70495 TTCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT- 70553 ||||| | || | | || || | || || |||| || || || || || |||| Sbjct 1345917 TTCATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTG 1345859 Query 70554 AATACGAGATGTAATTTTATCAAACATAAC 70583 || |||||||| ||||| || ||||| || Sbjct 1345858 GATGCGAGATGTGATTTTGTCGAACATGAC 1345829 >seq89 Length=2585884 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || ||||||| || |||||||||||||||||||||||| | Sbjct 777477 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTTCTA 777536 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || ||||| |||||||||| || | || ||||||||||| |||| || || || || Sbjct 777537 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGAT 777595 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || ||||||||||| || || | | || | |||||||| ||||| | ||| |||| Sbjct 776912 TAGGTTTCATAAGGGCCAAGCTCTGCTGCCAACTCACAACTGGCCTCCAGGGCAGCGTAG 776971 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || || || || || |||| | ||||| || || ||| | || || || ||||| Sbjct 776972 TACATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCCTCTGGGCTTTCAAACGGATAG 777031 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | || ||||| ||||| |||| ||||| || ||||| || || || || || | | Sbjct 777032 CGCATGAGGATAAAGGCATCAGCCAGACCCTGCACACCAATTCCAATTGGCCTGTGACGC 777091 Query 69136 TTATTTGAACTTTCAGC 69152 || || || |||||||| Sbjct 777092 TTGTTAGACCTTTCAGC 777108 >seq13 Length=10688992 Score = 96.9 bits (106), Expect = 5e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| || || ||||| | ||||| || | | || ||||||||||| || | ||| | Sbjct 6295551 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCT 6295492 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | || |||||||| || ||||| |||||||||||||| || |||||||| | Sbjct 6295491 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 6295432 Query 39759 CAACAA 39764 | |||| Sbjct 6295431 CCACAA 6295426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686830672710360