Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq36 102 6e-17 seq67 96.9 3e-15 seq29 95.1 1e-14 >seq36 Length=5414369 Score = 102 bits (112), Expect = 6e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| |||| || || ||| | || ||||| ||||| || |||| || ||||| Sbjct 2792234 GATGGCGCTGCCCCCCTGCCATGCACTCTGCCAGTTCTACGTGTGTGATGGCGAGCTGTC 2792175 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 ||||| |||| || | |||| ||| |||||| ||||||| || || ||||| || || Sbjct 2792174 GTGTCAGCTGTACCAGCGCTCAGCTGATATGGGATTAGGGGTGCCTTTCAACATCGCCAG 2792115 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | || || || || |||||||||||| |||| Sbjct 2792114 CTATTCACTTCTTACCTACATGATTGCACACATTAC 2792079 >seq67 Length=3709677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 87331 GCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAAAC 87390 ||||||| ||| || |||||| | || || ||||| || ||| |||| || |||| ||| Sbjct 3324108 GCTCCCATTTTGCTGAAATCTCTTTTGGACTGAAAGGTGTAGGCTGTTAATACAGCGAAC 3324167 Query 87391 ACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGT 87443 |||||||| || | ||| | | ||| ||||| |||||||| ||||||||||| Sbjct 3324168 ACAGCACAGGTGAGAAACAAAGCTTGCAGTATTGTGGAGTAATCATAGAAGGT 3324220 >seq29 Length=6224470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 ||||||| || |||||||||||| |||||| |||||||||||||| ||| | || | Sbjct 3898471 CTCTGACGAATGCCCAGGCATCTCGCTCTGAGGCAAACTTCTTAAAGGAGGCAGAAGGAA 3898412 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||||||| |||||||||||||| || |||| Sbjct 3898411 ATTTGTCCACTTGGCTCTTACACTCGTCCC 3898382 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| ||||||| || ||| || |||||| |||| |||||| || |||||| Sbjct 3901106 CCAGACCACCTCCACCTGTCCATTCAGCCTGTCCAGTTTCACAAAGTCGTCTTTGTTGGT 3901047 Query 77371 AAC-TGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 ||| ||| | ||| | || |||||||| |||| ||||||||||||| ||||| | | Sbjct 3901046 AACCTGATC-TCCAGATTTCAACCTCCAGCTGTTCAGCTTCCAGTTCTTCACCCAGCTGG 3900988 Query 77430 TCACACC 77436 ||||||| Sbjct 3900987 TCACACC 3900981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397411924489495