Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq38 170 2e-37 >seq38 Length=4945250 Score = 170 bits (188), Expect = 2e-37 Identities = 930/1460 (64%), Gaps = 48/1460 (3%) Strand=Plus/Minus Query 110648 AGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGG 110707 ||||| |||| ||||| |||||| || |||||| || | ||| | | | Sbjct 1347726 AGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTG 1347667 Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 |||||||| ||||||| | || | | | || || || |||| ||| || ||||||||| Sbjct 1347666 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1347607 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || ||||| || | || || || ||||| | | || | | ||| ||| Sbjct 1347606 GCCGTGGGCATCGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 1347547 Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGC-TTGGTTTCACCTTCCCACATGTCAAACTGAAG 110886 || || | | |||||| | | | |||| || || |||||||||| |||| || Sbjct 1347546 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCT-CCCACATGTCGTACTGGAG 1347488 Query 110887 CACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAA 110946 | || | | | || || || || | || ||||||| || | | | |||| Sbjct 1347487 AATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAG 1347428 Query 110947 TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACG-------AGCA- 110998 || |||||||| |||| | || | |||||| || |||||||| | |||| Sbjct 1347427 CTCGCAGCTCGCTTCCAAAGCGGCATAATACATTGTCTCAAAGATCTGGATGTTGAGCAG 1347368 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGC 111057 || | | | ||||| ||||| | || || || || || || |||| || Sbjct 1347367 TTGAGCCTCGGGGCTT--------TCAAAGGGATAACG-CATAAGGATGAAGGCATCAGC 1347317 Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 111117 | || || || || | || || || ||||| ||||| || ||| | | || || Sbjct 1347316 CAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTC 1347257 Query 111118 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 111177 || || || | || |||| || || ||| | || || ||||| | || | Sbjct 1347256 CACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTG---ACAATTACTTTGGT 1347200 Query 111178 TTC--ATGA-AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 | ||| | ||||| | | ||| |||| || ||| |||| ||| | || Sbjct 1347199 CACGGATGCCAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAG 1347143 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 |||| || |||| ||||||||| ||| ||| ||||| |||||||| | ||||| Sbjct 1347142 AGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTC 1347083 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 || || | |||| | ||| || || |||| ||||| ||||| |||||| ||||||| Sbjct 1347082 CGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCA 1347023 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 ||||| ||||||| |||||| |||||||| || || ||||| || | || || || | Sbjct 1347022 GGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATA 1346963 Query 111415 CCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 111473 ||| | | | | | || || || || ||| |||||| ||| || | |||| Sbjct 1346962 CCATAGCTGCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCCTCTCATATCTGGTGT 1346904 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 |||| ||||||||||||| ||| | || || || || || | | | ||||| Sbjct 1346903 AGAGTTCTTCAAACTCCTC-CCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACAC 1346845 Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 | || ||||| | | ||| |||||||||||||| ||||| || ||||||||| Sbjct 1346844 ATCAGGGACCAGTCTGTGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGG 1346785 Query 111593 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAG 111651 | | || | || || || ||| || | || ||| || | | ||| || Sbjct 1346784 GCGTAGAACAAGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTT-CTTCTTCAGCTCCAG 1346726 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTC 111707 || || | | ||| |||||| ||||| || || | |||| | || |||| Sbjct 1346725 AAAGTCGAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTT 1346666 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | |||| | |||| ||||| ||||||||| ||| | || | | |||||| | | Sbjct 1346665 GTTGCCC-CCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGA 1346607 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCA--CATCAT 111824 || | || || || || || || || | ||| ||| | || | | Sbjct 1346606 GCCCGTTGGAACAGCCGTTGGTGCCGGCGAT-GTAGCTCCCCGTGGATCTAATGCAGC-T 1346549 Query 111825 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 111884 | || || ||||| || || || | || ||||| | || || | | | || || Sbjct 1346548 GACTG-CCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGT 1346490 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 | ||||| || | ||| ||| ||||| |||||| |||||||| ||||||| ||||| Sbjct 1346489 CGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCG 1346430 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGAC 112003 | || || ||||||||||||||||| || | ||||| ||||| || | | ||| Sbjct 1346429 GCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGAC 1346371 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 | | || ||| ||||| | | | | || ||| ||| ||||| || | || ||| Sbjct 1346370 AGCAGGTTGTAGGTCTCGATGGCTTTTTTGATATCTGTCCCATGGATTCCCACAGCCACC 1346311 Query 112064 CGCATGAACATGTACTGTGG 112083 | ||||| ||||| ||| || Sbjct 1346310 CTCATGAGCATGTGCTGCGG 1346291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627960569210400