Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq38 187 3e-42 seq29 91.5 2e-13 seq13 86.0 8e-12 >seq38 Length=4945250 Score = 187 bits (206), Expect = 3e-42 Identities = 853/1327 (64%), Gaps = 28/1327 (2%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 1347666 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1347607 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || | || || |||||||| | | || | || || ||| Sbjct 1347606 GCCGTGGGCATCGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 1347547 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 118360 || || ||| ||| |||| | | | ||| | | || |||||| || ||||||| Sbjct 1347546 TTCAGCAGCTTCC-AGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAG 1347488 Query 118361 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 118420 || || | | | ||||| || || | |||||||| | ||| | | |||| Sbjct 1347487 AATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAG 1347428 Query 118421 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGC 118480 ||| ||||||| || | || || | ||||||||| ||||| || | || | || Sbjct 1347427 CTCGCAGCTCGCTTCCAAAGCGGCATAATACATTGTCTCAAAGATCTGGATGTTGA--GC 1347370 Query 118481 C-TTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537 ||| |||||| | ||||| | || ||| || || || |||| || | || Sbjct 1347369 AGTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGCCAATCC 1347311 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGG 118597 ||||| |||| || || || | || | ||| || ||| ||| || ||||| || Sbjct 1347310 CTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGG 1347251 Query 118598 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 118657 || | || | ||||||||| | || | || || | || || || | ||| Sbjct 1347250 GTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG-ATG 1347192 Query 118658 AAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716 |||| || ||| || | || ||| |||| ||| | || |||| | Sbjct 1347191 CCAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAG 1347135 Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776 | |||||||| || || | ||| ||||| ||||||||| | ||||||||||| | Sbjct 1347134 AGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAA 1347075 Query 118777 AGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 ||| | ||| |||||||||| |||| || || ||| |||| || ||||| | Sbjct 1347074 GGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTT 1347015 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 |||| | |||||| |||||||| || || || || |||| || || || | ||| | | Sbjct 1347014 TGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCT 1346955 Query 118897 CGGCAGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCT 118955 ||| ||| | || || | | |||||| ||| || | |||||||| || Sbjct 1346954 GCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCT 1346896 Query 118956 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 119015 |||||||| || ||| | ||| ||||| || | | || || | || ||| Sbjct 1346895 TCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGAC 1346836 Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075 || | | ||| |||||||||||||||||||| |||||||| || || |||| Sbjct 1346835 CAGTCTGTGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAC 1346776 Query 119076 AGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 | |||| || ||| || | | ||| || || || ||||| |||||| | Sbjct 1346775 AAGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGAAAGTCGAA 1346717 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAG 119190 | ||| |||||| || |||||||||| |||| | || ||| | | || Sbjct 1346716 CACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCC- 1346658 Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 |||| | ||||| | ||| ||| ||| | || | | |||||| | || || | || Sbjct 1346657 CCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGG 1346598 Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCGTGGATGTGCAT 119308 | ||| || || || || | ||| ||| | || | || || || Sbjct 1346597 AACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGC-TGACTGC-CAC 1346540 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 ||||| || || || | || ||||| | ||||| | | | || || |||||||||| Sbjct 1346539 GCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCC 1346480 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 ||||| |||| |||| | |||| ||||||||||| |||| || |||||| || Sbjct 1346479 CTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGT 1346420 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGT 119487 ||||| |||||||| || || | |||||| ||||| || | | |||| | || || Sbjct 1346419 TCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGT 1346361 Query 119488 AGGTCTC 119494 ||||||| Sbjct 1346360 AGGTCTC 1346354 >seq29 Length=6224470 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 1441025 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1440966 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||||| || || || ||||| ||||||||||||||||||||| Sbjct 1440965 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACA 1440916 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 1451402 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1451461 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||||| || || || ||||| ||||||||||||||||||||| Sbjct 1451462 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACA 1451511 >seq13 Length=10688992 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | ||||| || || ||| ||| || || ||||| || |||| ||||| Sbjct 6295551 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCT 6295492 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||| | || ||| |||||| |||||||||||||| || |||||| Sbjct 6295491 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 6295442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618364860726440