Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq38 122 1e-22 seq89 86.0 7e-12 seq29 84.2 3e-11 seq13 84.2 3e-11 >seq38 Length=4945250 Score = 122 bits (134), Expect = 1e-22 Identities = 934/1486 (63%), Gaps = 32/1486 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||||| | || || |||||| ||| || | | | Sbjct 1346291 CCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCATGGGACAGATATCAAAAAAGCC 1346350 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||| | | || ||||| ||||| | || |||||||| Sbjct 1346351 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCTT 1346409 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||||||| || || || || ||||||| |||||||| |||||| ||||| || Sbjct 1346410 CAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGA 1346469 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | || ||||| | || || | | | || || | ||||| || | || || Sbjct 1346470 CAGCATCGAGGGGATCTACGACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCCGG 1346529 Query 104461 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 104517 || ||||| || || || | || | ||| ||| | || || || || Sbjct 1346530 AGGGATTGGCGTGG-CAGTCA-GCTGCATTAGATCCACGGGGAGCTAC-ATCGCCGGCAC 1346586 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || || | || | | |||||| | | || | ||| ||||||||| || Sbjct 1346587 CAACGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTA 1346646 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 ||| |||| | |||| | |||| || | |||| | || || ||||| |||| Sbjct 1346647 TGTTGATCAGGG-GGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGC 1346705 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || ||| | | || || || ||| || ||| || | |||||| ||| Sbjct 1346706 ACTTCGATGTGTTCGACTTTCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAG 1346765 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | | || | |||| ||| || ||||| || || |||||||||||| | || ||| | | Sbjct 1346766 CCAGGGACTTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACA 1346825 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 | ||||| || | ||||| | | | || || || || ||| | ||| Sbjct 1346826 ACACAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTGCTG-GGGG 1346884 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACGGT 104871 ||||||||||||| || ||||| | || ||| || || ||| || ||| ||| Sbjct 1346885 GAGGAGTTTGAAGAACTCTACACCAGATATGAGAGGGAGGGGAGGGTGA-AGCGTGTGGT 1346943 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 | ||| | | ||| | || || || |||| || || || || || || || || Sbjct 1346944 GAAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTA 1347003 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||| | |||||||| ||||| ||| ||||| || || ||||| |||| ||||| Sbjct 1347004 CATGGTCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAA 1347063 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 | | ||| || || || |||||| | || | || ||| || ||| ||| || || Sbjct 1347064 GTGCAGCAACCTTTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCGGTTTG 1347123 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 105111 || || || || |||||||| || ||| || || ||| ||| | ||| | Sbjct 1347124 CAATCTGGCCTCTGTCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTATGACTT 1347180 Query 105112 TGAAAAACTCCACGAAGTTACGAA---AACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | ||||| | || || || || ||| || ||| | |||| ||||| || Sbjct 1347181 TAAAAAATTGGCATCCGTGACCAAAGTAATTGT---CAGGAACTTGAACAAGGTTATCGA 1347237 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || | ||||| || || || | | || || ||| | ||| | || || || Sbjct 1347238 CATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGCGCCACAGGCCGATAGG 1347297 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 |||| || ||||| | || |||| ||||| ||| || | | ||||| | Sbjct 1347298 AATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCTTATGCGTTATCCCTTTGAAAGCCC 1347357 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||| || | |||| | || |||||||| |||||| | |||||| | || || Sbjct 1347358 CGAGGCTCAACTGCTCAACATCCAGATCTTTGAGACAATGTATTATGCCGCTTTGGAAGC 1347417 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 ||| | ||| |||| | | || | ||||| || | || || || || | | Sbjct 1347418 GAGCTGCGAGCTGGCCGCCGAGCTCGGCACCTATGAGACGTACGAAGGCTCGCC-GGTGA 1347476 Query 105409 ACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGG 105466 ||||| | || || | || ||||||| || || |||| | | | |||| | Sbjct 1347477 GTAAGGGCATTCTCCAGTACGACATGTGGG-AGAAGACGCCAACGGACCTGTGGGACT-G 1347534 Query 105467 GAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 |||||| || ||||| ||| | | || | | ||||| || || || | || Sbjct 1347535 GAAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTGTCCCC 1347594 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 ||||| || ||||||||||| || ||| |||| || || || | | | || ||||||| Sbjct 1347595 GATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACAC 1347654 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCT 105645 | |||||||| | | ||| |||| |||||| ||| |||||| || || Sbjct 1347655 AAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAACCCCCACCT 1347714 Query 105646 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | | ||||| | ||||| || | ||| |||| |||||| Sbjct 1347715 GCTCAAAGACCTGACAGAGAGGGGCATGTGGAATGAGGAGATGAAG 1347760 >seq89 Length=2585884 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || || | |||| || || || |||||||||||||||||| ||||||| | Sbjct 777606 TGTGGTACGCCATCATTGAGTCGCAGACAGAAACTGGTACACCATACATGGTTTACAAGG 777547 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 | ||||| || |||||||||||| | ||| |||| ||||| |||||| | Sbjct 777546 ATGCCTGCAATAGAAAGAGTAATCAGCAAAATCTGGGCACCATCAAATCCAGCAATCTGT 777487 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 | ||||| ||| | || | || |||||||||| Sbjct 777486 GCACAGAGATCGTAGAGTACACGAGCAAAGATGAG 777452 >seq29 Length=6224470 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| ||||||||||| || || ||| ||| || | ||||| Sbjct 1440905 GCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCTGGCTG 1440964 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 1440965 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 1441024 Query 94936 G 94936 | Sbjct 1441025 G 1441025 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| ||||||||||| || || ||| ||| || | ||||| Sbjct 1451522 GCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCTGGCTG 1451463 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 1451462 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 1451403 Query 94936 G 94936 | Sbjct 1451402 G 1451402 >seq13 Length=10688992 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCT 94874 || ||||| ||| || || ||||||||||||||||| || ||| ||||| || ||||| Sbjct 6295431 GCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATT-TGCTGCTATCTACTGGCT 6295489 Query 94875 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||||| | || || ||||| || || ||| |||||||||||| || Sbjct 6295490 GAAGAAGAGGGGGCTAATGCCTGGCCTTAGCTACTCCAACGAGCTCAT 6295537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583194461374760