Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq38 196 5e-45 seq77 87.8 2e-12 seq29 84.2 2e-11 seq572 82.4 8e-11 >seq38 Length=4945250 Score = 196 bits (216), Expect = 5e-45 Identities = 474/707 (67%), Gaps = 22/707 (3%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || ||||| ||||| ||||| || || || ||| || Sbjct 1346378 AAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGCCGCAGCTG 1346437 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || |||||||||||| ||||| || |||||||| ||||| Sbjct 1346438 TCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGGATCTACGACACGCTG 1346497 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCA--CTGCTCGA-- 53441 ||| | || |||| ||||||||| | | || || || || | || | ||| | Sbjct 1346498 AAGCATTGCGCCCTCATCTCCAAATCAGCCGGAGGGATTGGCGTGGCAGTCAGCTGCATT 1346557 Query 53442 ACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGC 53501 | ||| | | | | || ||| || || |||||| || | || |||| | Sbjct 1346558 AGATCCACGGGGA-GCTAC----ATCGCCGGCACCAACGGCTGTTCCAACGGGCTCGTCC 1346612 Query 53502 CTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCA 53561 | ||| | | || | ||||||||| || || || || | ||||| ||| | | | Sbjct 1346613 CAATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAGGG----GGGCAACAAA 1346668 Query 53562 AG----GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTC 53617 || || | |||||||| ||||| ||||| |||||| ||| | | || ||||| Sbjct 1346669 AGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGCACTTCGATGTGTTCGACTTTCTG 1346728 Query 53618 GAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCT 53676 |||||| ||| ||| | || ||| ||| | | ||| |||| ||| || || Sbjct 1346729 GAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAGCCAGGGACTTGTTCTAC-GCCCT 1346787 Query 53677 GTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTG 53736 |||||| || |||||||||||| | ||||||||| || || |||| ||||||||| Sbjct 1346788 GTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAACACAGACTGGTCCCTGATGTG 1346847 Query 53737 CCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATC 53795 ||| ||| |||||||| || | | ||| || || ||||||||| | || | || Sbjct 1346848 TCCGGCCGACTGCCCCGGGCTGGATGAGTG-CTGGGGGGAGGAGTTTGAAGAACTCTACA 1346906 Query 53796 GGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATG 53855 | || | |||| | ||| ||| ||||| | || ||||| ||| Sbjct 1346907 CCAGATATGAGAGGGAGGGGAGGGTGAAGCGTGTGGTGAAGGCTCAGCAGCTATGGTATG 1346966 Query 53856 CAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCA 53915 ||||| || || ||| || || || |||||||||||| |||||| ||| | || Sbjct 1346967 CAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGGTCTACAAAGATGCCTGCA 1347026 Query 53916 ACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 || ||||||||||||| |||| | ||| |||||| | |||||| Sbjct 1347027 ACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAAC 1347073 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| || | || ||||| || || || || || |||||| |||||||||||||| | Sbjct 1347580 CCTGCTGCTGTCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 1347639 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| | ||||| | |||||||||| |||||| || | || |||||| || Sbjct 1347640 CATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGAT 1347699 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG-CAGAAGATCAACAAGTGGAACCCGCAGATCA 55670 ||||| ||||| |||| |||||| ||| ||| || |||||| | |||| | Sbjct 1347700 CGTCAACCCCCACCTGCTCAAAGACCTGACAG-AGAGGGGCATGTGGAATGAGGAGATGA 1347758 Query 55671 AGA 55673 ||| Sbjct 1347759 AGA 1347761 >seq77 Length=3037991 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||||||||||| ||||| |||||||||||| Sbjct 2033764 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCGTGCAGCCTGGTTCCAAACTGT 2033823 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 ||||| |||| | ||| || | ||||||| ||||| || ||||| || ||| Sbjct 2033824 CCCAGA-GGCTGCAAGAGATTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAA 2033877 >seq29 Length=6224470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 1441924 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 1441865 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 1441864 AAGTCAAAAGGGTTCT 1441849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 1450503 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 1450562 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 1450563 AAGTCAAAAGGGTTCT 1450578 >seq572 Length=48020 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || ||||| || || || | || |||||||| || Sbjct 8383 GTGAAGATGTAACGAGGACTGGCTGCATCTTTTCCTCCGTTGATGCGAGTACCGAACTGA 8324 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||| || || ||||| ||||||| |||||||||||| || |||| ||| || Sbjct 8323 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGTGCCAGGTTCACT 8264 Query 117425 ATCGT 117429 || || Sbjct 8263 ATGGT 8259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547153761020200