Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq38 196 5e-45 seq92 136 5e-27 >seq38 Length=4945250 Score = 196 bits (216), Expect = 5e-45 Identities = 559/852 (66%), Gaps = 17/852 (2%) Strand=Plus/Minus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGC 80965 || ||||||||||| || |||||||| || || |||| ||||||||||||||||| Sbjct 1347135 GAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTA--CTCGACGATTTCCGTGC 1347078 Query 80966 ACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT 81025 | | || |||| || || ||||| || | |||||| ||| |||||| || | Sbjct 1347077 AAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCAT 1347018 Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085 | |||||| ||||||||| || ||||| || ||| |||| || ||| || | ||| | Sbjct 1347017 CTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATA 1346958 Query 81086 TCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAG 81142 || | ||||| ||||| ||| | | || || | |||| ||| ||| Sbjct 1346957 GCTGCTGAGCCTTCACCACACGCTT---CACCCTCCCCTCCCTCTCATATCTGGTGTAGA 1346901 Query 81143 CTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 ||| || |||| | || ||| || | ||||| ||| || ||||||| Sbjct 1346900 GTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCA 1346841 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 || |||||| |||| |||||| || ||||||||| |||||||||||| |||||| Sbjct 1346840 GGGACCAGTCTGTGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGT 1346781 Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||||| ||| | | ||| |||||| | ||| ||| || ||| ||||||| Sbjct 1346780 AGAACAAGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGAAAGT 1346721 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC----CTTGCGACGG 81378 | | | || ||||| |||||||| |||| ||||| | || ||| | | Sbjct 1346720 CGAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTG-TTG 1346662 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 || ||||| | || ||||| || || ||| | || | |||||| |||| || || Sbjct 1346661 CCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCG 1346602 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA 81498 | || ||||| || || |||| |||| ||| | | ||||| || Sbjct 1346601 TTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCC 1346542 Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 | || || || || | | || || || | || || | |||| || || || || Sbjct 1346541 ACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATC 1346482 Query 81559 CCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTT 81618 ||||||||||| || | |||||| | |||| ||| ||||| |||| ||| || || || Sbjct 1346481 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTG 1346422 Query 81619 GAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | || |||||||| || || |||| ||||| |||| | | ||||| ||||| Sbjct 1346421 GTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTG 1346362 Query 81679 TAGGTTTCCTTGACGCGTGGAATATC-GTCACCGTGAATACCGATAGCTACACGCATAAA 81737 ||||| || || | | ||||| ||| || || || || | ||| || | ||| | Sbjct 1346361 TAGGTCTCGATGGCTTTTTTGATATCTGTC-CCATGGATTCCCACAGCCACCCTCATGAG 1346303 Query 81738 CATGTACTGGGG 81749 ||||| ||| || Sbjct 1346302 CATGTGCTGCGG 1346291 >seq92 Length=2575742 Score = 136 bits (150), Expect = 5e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||||||| | | Sbjct 2563970 ATGCAGATCTTGGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 2563911 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||||||||| ||||| ||||| || ||||| || |||||| Sbjct 2563910 GACACCATTGAGAACATCAAGGCTAAAATCCAGGATAAGGAAGGCATTCCACCTGACCAG 2563851 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||| ||| ||||| || | |||| || ||||| | ||||| || Sbjct 2563850 CAGAGGCTGATCTTTGATGGCAAGCAGCTGAAAGATGGCCGCACCCTCTCTGACTACAAC 2563791 Query 27586 GTCCAAAAGGAATCCACTCT 27605 |||| || || ||||| || Sbjct 2563790 ATCCAGAATGAGTCCACCCT 2563771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570245534320880