Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq36 141 8e-29 seq51 96.9 3e-15 >seq36 Length=5414369 Score = 141 bits (156), Expect = 8e-29 Identities = 137/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| ||||||||||| || || |||||||||||||| || ||||| ||||| ||||| Sbjct 2792885 CATGTCTGTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTC 2792944 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || |||| ||| || ||||||| ||||| | || |||||||| || Sbjct 2792945 ACCCTCCTCTCTGTCAGTGAACCCAAGGTTGTCCAGGAAGTCCCGAGACCCGTTGGCATC 2793004 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30396 ||||||||| || || || || || ||||| ||||| ||||| || |||| |||| Sbjct 2793005 CCAGATCTTCACTCCTTTTTCTGACAGCTCCTTGGAATTTGTTGATCCCTGTGAC 2793059 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | ||| || |||||||| || || || || |||||||||||||| || || Sbjct 2792073 AGTCCTGTAATGTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCGATGTTGAAAGGC 2792132 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 ||||| | ||||| || | || | |||||| ||||||||||| ||||| || || | | Sbjct 2792133 ACCCCTAATCCCATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCACAC 2792192 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||||| ||||| || | || ||||| || || || ||||| Sbjct 2792193 ACGTAGAACTGGCAGAGTGCATGGCAGGGGGGCAGCGCCAT 2792233 >seq51 Length=4348224 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 || |||||||||||| | ||| | |||| |||||||||| ||||| || ||||| || Sbjct 4135838 CTTCCTGCTGAGGACAATGTTGACTCTGTTGCTCAGAGGTCGGTTCTTCTCTGGGATAGA 4135897 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 | |||| ||||| | ||||| |||||||| |||||||||||| Sbjct 4135898 GTACCACGTCTTCTTGCCCATGATCACCACATTCTGCTTGCCT 4135940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 |||||||||| ||||||||| | || ||||| |||| || | || |||||||| ||| Sbjct 4135158 ACTCTGGCAGCAGACGATATTTGTCCAGACTGATCTCAGGTAAGAATGTGTCGCATTCAA 4135217 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCC 110277 | ||| || | |||||||||||||| || | || |||| |||| |||| | |||| Sbjct 4135218 ACTGCTTCAGAATTTGAGTGACAAACAGTCTTCTCATTCCCGTGCTCCCCATCATCTCC 4135276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406265342589108