Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq36 114 1e-20 >seq36 Length=5414369 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || || || | || || || |||||||| ||||||||||| ||| Sbjct 2792085 TGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCGATGTTGAAAGGCACCCCTAATCCC 2792144 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || | || || || || ||||| || |||||||| |||| |||||||| ||| Sbjct 2792145 ATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCACACACGTAGAACTGG 2792204 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| | ||||| ||||| ||||||||| ||| || || Sbjct 2792205 CAGAGTGCATGGCAGGGGGGCAGCGCCATCCTAGGAAGGTC 2792245 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || ||| ||||||||| ||||| ||||| | |||||||| |||||||| || Sbjct 2792245 GACCTTCCTAGGATGGCGCTGCCCCCCTGCCATGCACTCTGCCAGTTCTACGTGTGTGAT 2792186 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| || ||||| || || || || | || ||||| ||||||||||| ||| Sbjct 2792185 GGCGAGCTGTCGTGTCAGCTGTACCAGCGCTCAGCTGATATGGGATTAGGGGTGCCTTTC 2792126 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || | || || || |||||||| || || Sbjct 2792125 AACATCGCCAGCTATTCACTTCTTACCTACATGATTGCACA 2792085 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||||||||| || || || || || | ||| |||||||| Sbjct 2792895 TACTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTCACCCTCCTCT 2792954 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | |||||| | |||||||| ||||| |||||||||| || |||||||||||| Sbjct 2792955 CTGTCAGTGAACCCAAGGTTGTCCAGGAAGTCCCGAGACCCGTTGGCATCCCAGATCTTC 2793014 Query 7019 ACCCC 7023 || || Sbjct 2793015 ACTCC 2793019 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || |||||||||||||| || |||||||||| ||||| |||||||| | |||||| | Sbjct 2793019 GGAGTGAAGATCTGGGATGCCAACGGGTCTCGGGACTTCCTGGACAACCTTGGGTTCACT 2792960 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 | |||||||| ||| | || || || || || ||||||||||| |||||||| || Sbjct 2792959 GACAGAGAGGAGGGTGACCTAGGACCTGTGTATGGTTTCCAGTGGAGGCACTTTGGTGCA 2792900 Query 34442 GAGTA 34446 ||||| Sbjct 2792899 GAGTA 2792895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448211415755280