Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq65 129 1e-24 seq9099 95.1 3e-14 seq928 95.1 3e-14 >seq65 Length=3759856 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||||||||| || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 3001566 CAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 3001507 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || |||||||| ||||| |||||||| || Sbjct 3001506 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATC 3001447 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||| ||| || |||||||| || || || || | ||||| || Sbjct 3001446 CTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGT 3001387 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| || || | ||||| | || | ||||| || Sbjct 3001386 CTTACCAGTTAGGGTTTTCACAAAGATCTGCATGTT 3001351 >seq9099 Length=16587 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/176 (72%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| || || ||| |||| || ||||| ||||| || ||||||||| | || ||||| Sbjct 5628 TTTATAATGTAATTGTTACAGCACATGCTTTTGTAATAATTTTCTTTATAGTAATGCCAA 5687 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 |||| || || || || || || ||| | ||||| | ||||||||||| || || || | Sbjct 5688 TTATAATTGGAGGCTTTGGGAACTGACTAGTTCCCCTTATGATTGGTGCACCAGACATAG 5747 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 | ||||| | | || || || || || ||| | || || | ||| ||||||| Sbjct 5748 CCTTTCCTCGAATAAATAACATGAGCTTCTGACTCCTTCCCC---CCTCATTTCTA 5800 >seq928 Length=15780 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/176 (72%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| || || ||| |||| || ||||| ||||| || ||||||||| | || ||||| Sbjct 9787 TTTATAATGTAATTGTTACAGCACATGCTTTTGTAATAATTTTCTTTATAGTAATGCCAA 9728 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 ||||||| || || || || || ||| | || || | ||||||||||| || || || | Sbjct 9727 TTATGATTGGAGGCTTTGGGAACTGACTAGTACCCCTTATGATTGGTGCACCAGACATAG 9668 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 | ||||| | | || || || || || ||| | || || | ||| ||||||| Sbjct 9667 CCTTTCCTCGAATAAATAACATGAGCTTCTGACTCCTTCCCC---CCTCATTTCTA 9615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192392173594706