Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq36 123 2e-23 seq51 91.5 1e-13 >seq36 Length=5414369 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | ||| || |||||||| || || || || |||||||||||||| || ||| Sbjct 2792073 AGTCCTGTAATGTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCGATGTTGAAAGGC 2792132 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| | ||||| || |||| | |||||| ||||| ||||| ||||| || || | | Sbjct 2792133 ACCCCTAATCCCATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCACAC 2792192 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||||| ||||| || | |||||||| || || || ||||| Sbjct 2792193 ACGTAGAACTGGCAGAGTGCATGGCAGGGGGGCAGCGCCAT 2792233 Score = 114 bits (126), Expect = 1e-20 Identities = 118/153 (77%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || ||||| ||||| ||||| ||||| || |||| ||| Sbjct 2792907 AAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTCACCCTCCTCTCTGTCAGTGAAC 2792966 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||| ||||| | || |||||||| ||||||||||| || || || || Sbjct 2792967 CCAAGGTTGTCCAGGAAGTCCCGAGACCCGTTGGCATCCCAGATCTTCACTCCTTTTTCT 2793026 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30168 || ||||| ||||| ||||| || |||| |||| Sbjct 2793027 GACAGCTCCTTGGAATTTGTTGATCCCTGTGAC 2793059 >seq51 Length=4348224 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 || |||||||||||| | ||| | |||| |||||||||| ||||| || ||||| || Sbjct 4135838 CTTCCTGCTGAGGACAATGTTGACTCTGTTGCTCAGAGGTCGGTTCTTCTCTGGGATAGA 4135897 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 | |||| ||||| | ||||| |||||||| |||||||| ||| Sbjct 4135898 GTACCACGTCTTCTTGCCCATGATCACCACATTCTGCTTGCCT 4135940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406118158912714