Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq38 428 6e-115 seq89 84.2 3e-11 >seq38 Length=4945250 Score = 428 bits (474), Expect = 6e-115 Identities = 1283/1967 (65%), Gaps = 35/1967 (2%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || |||||||||| ||||||||| | || | || || || || || Sbjct 1347762 TTCTTCATCTCCTCATTCCACATGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 1347703 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || ||||| || || || | || | || ||||| || || || || || | || Sbjct 1347702 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 1347643 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || | || || Sbjct 1347642 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGACAGCAGC 1347583 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | |||||| | ||| || || || || ||||| ||||| || Sbjct 1347582 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1347523 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || ||||| | ||||| || ||||| || ||||| | || || Sbjct 1347522 TCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCT 1347463 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || || ||||| | || || | | || || || || ||||||||||| || Sbjct 1347462 TCGTACGTCTCATAGGTGCCGAGCTCGG---CGGCCAGCTCGCAGCTCGCTTCCAAAGCG 1347406 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 | ||||| ||||| || || |||| | ||||| ||| || || || ||||| Sbjct 1347405 GCATAATACATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAG 1347346 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 |||||| | | ||| || |||||||| || |||||||| || || || || || || || Sbjct 1347345 GGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTG 1347286 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | | | || || | | |||||| | || || || || ||||| |||| || Sbjct 1347285 TGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTG 1347226 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 || | || || |||| |||||| |||| | ||| ||| ||| | | | Sbjct 1347225 TTCAAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGC 1347166 Query 77658 TCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 || | || ||||||| | ||| | ||| || ||||| ||||| || ||||| | Sbjct 1347165 TCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCC 1347106 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | | | || | | || || || || || || || || ||||| ||||||||||| Sbjct 1347105 TTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTC 1347046 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || ||||||||||| | ||||| | || || || | || |||| ||||||||||| Sbjct 1347045 TGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCT 1346986 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCG 77893 |||| || ||||| || | | ||| | | || ||| || | || | || | Sbjct 1346985 GTCTGCGACTCGATGATTGCATACCATA-GCTGCTGAGCCTTCACCACACGCTTCACCCT 1346927 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || ||| || |||||| || || || |||||| || || ||||| ||||||| Sbjct 1346926 CCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAG 1346867 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 || ||||| || || ||||||| |||||||| | | || || || ||||| Sbjct 1346866 CCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTGTGTTGTTCTCCACCCGCTTCAT 1346807 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 ||||| ||||| ||||| || || || | || | || || || || || ||||| Sbjct 1346806 GAAGAGGTCAGGGATCCACAGGGCGTAGAACAAGTCCCTGGCTCGCTGCTCCTCCTTTCC 1346747 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 || ||||| || || || ||||| || | | ||| | ||||| || || || || || Sbjct 1346746 CGTGTTCTTCTTCAGCTCCAGAAAGTCGAACACATCGAAGTGCCAGGGCTCCAGGTACAT 1346687 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | || |||| ||| || || |||||||| | ||| | || ||||| || || Sbjct 1346686 GGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTA 1346627 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 ||| ||||||||||| | | ||||| || || || || || | || || || || Sbjct 1346626 AACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCC 1346567 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | | | ||| || | | | || || ||||| || || || || || || Sbjct 1346566 CGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGC 1346507 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 |||| | |||| || |||||||| ||||| || ||||||||| ||||| || || || Sbjct 1346506 GCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAA 1346447 Query 78374 ACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 ||||| |||| || || || ||||| ||||| || | ||||| || || | Sbjct 1346446 GCAGCTGGACAGCTGCGGCCTGTTG----GTTCCAGCATTGAAGAGGGTCGGGGAGGCGT 1346391 Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGAT----TCTATGTCC 78485 | || ||||| || || || || || ||||| || || || ||| | | | ||||| Sbjct 1346390 GGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTTTTTGATATCTGTCC 1346331 Query 78486 CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTA 78545 | ||| ||||| || || || | ||| | ||| ||||| || | ||| | || Sbjct 1346330 C----ATGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTG 1346275 Query 78546 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 78605 ||| || || | || ||| || |||| ||| || || ||||| ||||||| || Sbjct 1346274 CCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAG 1346215 Query 78606 AAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCC 78665 || ||||| || || || || | || || || ||||||| | |||||| || Sbjct 1346214 AAATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCG 1346155 Query 78666 ATGACAGTAGTT-GAAATAATAGGAGATCGTACACCATTTTTA--GGATTAACATAGTTA 78722 | | || || ||||| || | || || | || | || || | ||||| Sbjct 1346154 A-GTGTGTCTTTCGAAATCATGGACGA--GTGGCGTTTGTTCAGGGGGTTGATGTAGTTG 1346098 Query 78723 AATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACA 78782 | | || ||||| || || || || | || || || || ||||| || ||||| || Sbjct 1346097 TACAGGTCCTCCATGACTTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTAGAGACG 1346038 Query 78783 GCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATT 78842 || || | ||| || || || || || ||||| | | || || |||||| || || Sbjct 1346037 GCGATGCGTGCGGCGAGGATGGCGTAGTCAGGGTACTTGGTTGTGAGAGTGGCAGCAATC 1345978 Query 78843 TCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACT 78902 || ||||| | | || | ||| | ||| ||||| || | || | || || || || Sbjct 1345977 TCCGCCGCCAGCGTGTCAAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACC 1345918 Query 78903 TTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCT- 78961 ||||| | ||| | | | || || |||||||| |||| | ||| || || || |||| Sbjct 1345917 TTCATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTG 1345859 Query 78962 AATACGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 || |||||||||||||| || || || || ||| | || ||||| Sbjct 1345858 GATGCGAGATGTGATTTTGTCGAACATGACGCGCTCTTGGCGTCCAT 1345812 >seq89 Length=2585884 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || ||||||| |||||||||||||| || || |||||| || Sbjct 777477 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTTCTA 777536 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | ||||| |||| || | || || || ||||| |||| || || || || Sbjct 777537 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGAT 777595 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| |||| ||| || || || ||||| || ||||||||||| || | |||||| | Sbjct 780691 CACCACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGCGATGCGTGCAGCCA 780750 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | | ||||| || || |||| || || |||||| || | ||||| || | | | | Sbjct 780751 GGACTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGT 780810 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGG 78909 | | ||| | || ||||| ||| | || | || || || || ||||||| Sbjct 780811 CGAGCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCATGG 780861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694589790107360