Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq67 156 6e-33 seq47 114 2e-20 seq111 109 8e-19 >seq67 Length=3709677 Score = 156 bits (172), Expect = 6e-33 Identities = 179/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404 ||| | ||||| || |||| || || || |||||||||||||||||||||||| || Sbjct 1684689 GCGGTGTTGACCATGTCGAAGCCGACCGTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 1684630 Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464 |||||||||||| || |||| ||||| ||||||||||| |||||||||| ||| | Sbjct 1684629 GGGGAGCAGATGGGATTTCCCATTAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACC 1684570 Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524 || | || || |||||| |||| | | |||||| ||||||| | || | ||| | | Sbjct 1684569 ATTGTTTCCCCAAAGATGCCGTTATGTCTGGGCTTCTCCACCAGCAGGCCCGGGTAGAAC 1684510 Query 8525 TCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 |||||||| || |||| ||||| || || || | ||||| || || || || ||| Sbjct 1684509 TCCACAGCATCCACGTGCCCGTACAGCTCCTCCAGCACCGCAGCCATTTCTTTCTCCCCT 1684450 Query 8585 G 8585 | Sbjct 1684449 G 1684449 Score = 141 bits (156), Expect = 1e-28 Identities = 126/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 ||||| | |||||| || | ||||||||| ||| |||||| ||| | ||| || | Sbjct 1683021 CCGATTAGGATGAGCCGTGCGGTCTGGAAGAGTCTTTCGTCATCCCAGTGTGGGTGGACC 1682962 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | |||||| ||||||||||| | ||||||||| | |||||| || |||||||||||||| Sbjct 1682961 TCTTTCAGCACATCGCACACACGGTTGTGTTCGCGGAGCCATATGGTGGCGTACATCATC 1682902 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 || ||||| ||||||||||| ||||| || ||||| || Sbjct 1682901 AGACCAGGGACCAGGCCAAATGCCTCGTGGCCGACGGC 1682864 Score = 86.0 bits (94), Expect = 9e-12 Identities = 202/300 (67%), Gaps = 14/300 (5%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGA--- 9000 ||||| || || || || || || |||||||| || || || | | | |||||||| Sbjct 1683633 CTTACCCGTCCCGCAATCTGATTGGTGAACGACTCCACCAGGTTGCTGATGCCGTGCTCG 1683574 Query 9001 GTCATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATC 9060 |||| || ||| ||||| |||| || | |||| || | ||| | || || Sbjct 1683573 GTCACGAC---GGAGGTGTTGAAGACAAACTGCTTGTAGCTGTAATCTGTCTCCTCGATG 1683517 Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120 | || ||| ||||| |||| |||||||| || | |||| ||||| || || Sbjct 1683516 TGGAAACTATCGGGCATCAGAGGGTGCCAGTGGTAAAGGGTGTTGAACTCAGACGCGATG 1683457 Query 9121 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAA 9179 || || ||||||||||| || | ||||||||| ||||| | |||| || | || Sbjct 1683456 CGGTTCTGGTACTGGAAGCGCTG-GTTAAAGAGCAGCTCGGGGTCAAACTTGAGTTTGAA 1683398 Query 9180 ATGGTAGCCGCTGAGCTGCTGAACGTATTGC---GTCACGATAATGTTGATGGTTTCCCC 9236 || |||||||| || ||||| ||||| | | ||||| || |||||||| || || Sbjct 1683397 GTGATAGCCGCTCAGATGCTGCACGTAGTCCTCGATCACG---ATTTTGATGGTCTCACC 1683341 >seq47 Length=4508581 Score = 114 bits (126), Expect = 2e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| || |||||||||||||||||||| |||| ||||| || ||| Sbjct 426131 AAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAGCATATAGGGTTT 426072 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||||||||| |||||||| || || |||| ||| | ||||| || || || ||| Sbjct 426071 CCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCTCCAAATATG 426012 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || | || | || |||| ||| || |||| ||| | |||| ||| || | ||| Sbjct 426011 GCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGAGCGTCAATGTCA 425952 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 425951 CCGTAGAG 425944 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || |||||||| ||||| || ||||||||||| || ||||| || ||| ||||| Sbjct 423754 TCACCGATAATAATGAGCCGTGTGGTCTGGAAAAGCTGCTCATCGTCCCAGGTGGGATGC 423695 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | ||| || || | |||||| ||||| ||||| | ||||||||||| Sbjct 423694 TCCGCTTTCAATATATCACAGACTCGGTTGTGCTCCCTCAGCCACAGCGTGGCGTACATT 423635 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | ||||| | || ||| | | || ||||||| ||||| | | |||| Sbjct 423634 CCCAAACCAGGGAGAAGTCCATAGACTTCCTGACCGATAGCCATCTGAGCCTCAGCGGGG 423575 Query 9412 ACTTCGGGAGGATAGATCAT 9431 ||| ||||||| ||| |||| Sbjct 423574 ACTCCGGGAGGGTAGCTCAT 423555 >seq111 Length=2041907 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || ||||||||||||| | |||||||| || ||||| ||| ||| ||||| Sbjct 108269 TCACCAATAATGATGAGTCTGGCTGTCTGGAAAAGCTGCTCATCATCCCAGGTGGGATGC 108210 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| || || | || || || ||||| ||||||| ||||| || ||||| ||||| Sbjct 108209 TCTGCCTTTAGGATGTCACAGACTCTGTTATGTTCCCGCAGCCATATGGTGGCATACATG 108150 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | || || || | | |||||| |||| ||||||| ||||||||| ||| | | || Sbjct 108149 GTTAGACCCGGCAGGATGCCAAATACCTCCTGACCGATGGCCAGACGCCTGTCTGCTGGG 108090 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTC 9446 | | |||||| | ||||||||| |||| || Sbjct 108089 ATGTTTTCAGGATACACCATGTGCACTGGGACCTC 108055 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| ||| |||| ||| || || | | ||| || |||||||||| Sbjct 111366 GGACACCATTTGCTGTTGAGACACACCAGTTTTTTCAGAGTGGCCATCTTGACGATATTA 111307 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || ||||| || |||||||||||||||||||| | || |||||||| ||| Sbjct 111306 AAGCCGGTTTCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTT 111247 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | |||||||| || || || ||||| |||| ||| | |||||||| || || ||| Sbjct 111246 CCAAGCAGGCCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATG 111187 Query 8483 GCGTTGGGACGG 8494 || || |||||| Sbjct 111186 GCATTAGGACGG 111175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716795264224960