Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4 102 8e-17 >seq4 Length=75030901 Score = 102 bits (112), Expect = 8e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || ||||| || ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 61465735 ATGTAGGTGTCGATCAGCAGGCTGTACATCTCAGAGTGAATGTTCTCCATGGCGATCTGG 61465676 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 || ||||| ||||||| |||||| | ||| || |||||| Sbjct 61465675 AAACCGTAGAAGCATCTGGCTTCTGGTATCTGTACTTCC 61465637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || ||||| || ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 61476187 ATGTAGGTGTCGATCAGCAGGCTGTACATCTCAGAGTGGATGTTCTCCATGGCGATCTGG 61476246 Query 17294 AATCCGTAAAAGCATCGGGCTTC 17316 || ||||| || |||| |||||| Sbjct 61476247 AAACCGTAGAAACATCTGGCTTC 61476269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517507450419960