Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 601 4e-167 seq11 84.2 3e-11 >seq6 Length=67274854 Score = 601 bits (666), Expect = 4e-167 Identities = 1301/1942 (67%), Gaps = 13/1942 (1%) Strand=Plus/Plus Query 53084 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 53143 || ||||| ||||| || |||| | |||| || | || | || || || ||| Sbjct 22087148 CTGTTCTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGA 22087207 Query 53144 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 53203 ||||| | || || |||||||| | || || |||||||| || || ||||| || | | Sbjct 22087208 TTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCT 22087267 Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263 || | ||||| || || |||| || || || || || || || ||||| || || | | Sbjct 22087268 TCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGC 22087327 Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 53323 | | |||||||| | || | | | ||| || ||||| || | | ||| | ||| Sbjct 22087328 AGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCCAGTCCCAC 22087387 Query 53324 AGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGAT 53383 || || | || ||| || || || || ||| | || Sbjct 22087388 AGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGAA 22087447 Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || ||||| ||||| || ||||||| || || |||||||| | ||| Sbjct 22087448 CCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTCCAGAGCA 22087507 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 |||| || ||||| || || |||| | ||||| || || || |||| || || Sbjct 22087508 GCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCTTTCGAAG 22087567 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 |||||| | || || || || ||||| || |||||||| ||||| || || || || Sbjct 22087568 GGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCTG 22087627 Query 53564 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 53623 || | ||| || || | |||||||| |||| || || || || || || || | || Sbjct 22087628 TGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAATGACCTTG 22087687 Query 53624 TTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA 53683 ||||||||| ||||||| |||||| |||| ||| || || ||||| |||| Sbjct 22087688 TTGAGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTCAAAA-GTCCG 22087746 Query 53684 TC----TATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT- 53738 | | | || ||||||| | ||||| || || || ||||| || || ||||| | Sbjct 22087747 TTCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTC 22087806 Query 53739 -TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 53797 | || | || | | | || ||||| || || || || |||||||| || | | Sbjct 22087807 TTTGCTGGTG--TACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGA 22087864 Query 53798 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTT 53857 || || || |||||||| ||||||| ||||| || || || ||| ||||||| || ||| Sbjct 22087865 TTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTT 22087924 Query 53858 TCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTAT 53917 || ||||||| || ||||| || | ||||| ||||||| | | | || Sbjct 22087925 TCTGTCTGGGACTCAATAATGGCATACCAGAGCTGCTGAGCCTTCACCACACGCTTCACC 22087984 Query 53918 CTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCC 53977 ||| || |||| ||| || |||| | ||||||||| || ||||| | |||| Sbjct 22087985 CTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCC 22088044 Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 54037 | |||||||| || | |||||||| | ||||| | | || | || ||||| ||| Sbjct 22088045 AGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTC 22088104 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 54096 || || ||||| |||||||| || || ||| || || ||||||| ||| || ||||| || Sbjct 22088105 ATGAACAGATCTGGAATCCACAGGGC-ATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTT 22088163 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 |||||| ||||| || || || ||||| | | | |||| | ||||| || |||| ||| Sbjct 22088164 TCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTA 22088223 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 |||| | ||||||| | |||||| || |||||||| | || | ||| || || || Sbjct 22088224 CATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTT 22088283 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 |||||||||||||| || | | || ||||| ||||||||| || | ||| ||||| Sbjct 22088284 GTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCT 22088343 Query 54277 TCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 || | | | ||| || | | | || || || || || ||| || || | Sbjct 22088344 CCCGGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAG 22088403 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 || || | || | || ||||| ||||| || || || || || ||||| || || Sbjct 22088404 GGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAG 22088463 Query 54397 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 || ||||| |||| || | || | ||||| || || || | ||| || || ||||| Sbjct 22088464 GAAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTG 22088523 Query 54457 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG 54516 || ||||| || || || || || ||||||||||| || |||| || || || | | Sbjct 22088524 GGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTCTC 22088583 Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576 ||| || || || | || | ||| | ||||||||| || | || | | || || Sbjct 22088584 ATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCATT 22088643 Query 54577 TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 54636 || ||||||| ||||| |||| ||||| || || || ||||||| || || || Sbjct 22088644 GATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAATC 22088703 Query 54637 TCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 54696 || |||||||| || | || ||||| || || | | ||| | | | || Sbjct 22088704 TCTGTCGTAAATTATGGCCGAATTGAGGCGGTCTTTGTTCTCCAGAACAATGTTGAGCGT 22088763 Query 54697 AATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATC 54756 |||| || || || || || | | || |||||||| ||||| | | || Sbjct 22088764 CTCTTTTGAGATCATGGGGGAGTGCTGCTTGTTCAGAGGATTGATGTAGTTGTACAGGTC 22088823 Query 54757 CTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 54816 | ||||||||||||||| | |||||| || |||||||| || ||||| || || || || Sbjct 22088824 TTCCATCACTTCACTAAACACTTTTTTCGTCTCTTTGTGGAGGTTTGAGACAGCGATCCT 22088883 Query 54817 AGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGT 54876 ||||| ||||||||||| || || |||| || || ||||| || |||||||||| Sbjct 22088884 TGCGGCGAGAATGGCATAGTCGGGGTGTTTAGTTGTCAGTGTGGCAGCAATTTCGGCTGC 22088943 Query 54877 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 ||| ||||| | || || || || || || | || | || ||||| |||||||| | Sbjct 22088944 CAGCGTGTCAAGCTCCACAGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATTGT 22089003 Query 54937 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAG 54995 |||| | ||||| | ||| | |||| || || || || |||| || |||| Sbjct 22089004 GATTTGAGCTGGATCCACGAAATCTGAATTTAGACCGTAGCA-AAGCTTCTGGATGCGAG 22089062 Query 54996 ATGTGATTTTATCAAACATGAC 55017 | |||||||||||||||||||| Sbjct 22089063 AGGTGATTTTATCAAACATGAC 22089084 >seq11 Length=48234189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| || || || ||||| || | || || || | Sbjct 16876973 CACTGAATACTTTCTTGGTTTCTTTGTGCAGGTTGGACACGGCAATACGTGCTGCCAGGA 16876914 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || ||||||| || || ||||| || | || || | || ||||||| Sbjct 16876913 TTGCATAGTCAGGATGTTTAGTGGTGAGGGTGGCGGCCGTCTCTGCAGCCAAGGTGTCCA 16876854 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || || | || | || ||||| |||||||| Sbjct 16876853 GTTCCACGGTGGTGACGCCGCTGTACAGACCCTGGATCACCTTCAT 16876808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593677835296560