Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq8 149 7e-31 >seq8 Length=57680405 Score = 149 bits (164), Expect = 7e-31 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || || | ||| |||| ||||||||| || || | |||||||| |||||||| Sbjct 19731638 CTTGAGTCCTGTAATGTGAGCGATCATGTAGGTGAGAAGAGCATAGCTGGCGATGTTGAA 19731579 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 |||||||| || ||||| || |||| |||||||||||||| ||||| ||||| || | Sbjct 19731578 CGGCACCCCAAGACCCATATCGGCCGATCGCTGGTACAGCTGACAGGACAGCTCGCCATC 19731519 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 ||||||||||||||||| |||||| || ||||| |||||| ||| ||||| Sbjct 19731518 ACAGACGTAGAACTGGCACAGAGCGTGGCACGGGGGCAGAGCCATGAGGGGGAGGTC 19731462 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 |||| | || || ||||||||||||||||| ||||| || || ||||| ||||| ||| Sbjct 19730747 GTACTCTGCACCAAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGATCCCCCTCCTC 19730688 Query 146100 CCTGTGC-CCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCT 146158 |||| | ||||| | | | || ||| |||||||||||||||| ||||| ||| Sbjct 19730687 TCTGTCCGTGAAGCCCAG-TTTGTCCAGAAAGGCCCGGGACCCGTTGGCATCCCAAATCC 19730629 Query 146159 TGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCC 146199 | || || | | || ||||| |||| | ||||||||| Sbjct 19730628 TCACACCTTTGTCTGACAGCTCCTTGGCATTTGTGGACCCC 19730588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590033303963880