Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq11 127 2e-24 >seq11 Length=48234189 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||||||||| Sbjct 37620564 GTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 37620623 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| || | |||||||||||| |||||| |||| Sbjct 37620624 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTC 37620683 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| ||||| |||| ||| |||||||| || || | || Sbjct 37620684 ACGTTCTCGATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTACCAGTGAGGGTC 37620743 Query 21159 TTGACAAATATTTGCATTTT 21178 |||||||| || ||||| || Sbjct 37620744 TTGACAAAGATCTGCATGTT 37620763 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| |||||||| ||||| | ||||| || | || || ||||| ||||| Sbjct 21619923 GTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 21619982 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 21619983 GCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTG 21620042 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| ||||| |||| ||| |||||||| || || | || Sbjct 21620043 ACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTC 21620102 Query 21159 TTGACAAATATTTGCATT 21176 |||||||| || |||||| Sbjct 21620103 TTGACAAAGATCTGCATT 21620120 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| |||||||| ||||| | ||||| || | || || ||||| ||||| Sbjct 21620151 GTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 21620210 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 21620211 GCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTG 21620270 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| ||||| |||| ||| |||||||| || || | || Sbjct 21620271 ACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTC 21620330 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 21620331 TTGACAAAGATCTGCAT 21620347 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| |||||||| ||||| | ||||| || | || || ||||| ||||| Sbjct 37620336 GTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 37620395 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 37620396 GCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTG 37620455 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| ||||| |||| ||| |||||||| || || | || Sbjct 37620456 ACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTACCAGTGAGGGTC 37620515 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 37620516 TTGACAAAGATCTGCAT 37620532 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || | || |||||||||||||| Sbjct 37619911 GTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCTTCCAGCTGTTTGCCA 37619970 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||| | || || ||||||||||| || | |||||||||||| |||||| Sbjct 37619971 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTT 37620023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422228852363252