Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11 125 7e-24 seq4 120 3e-22 seq19 109 6e-19 >seq11 Length=48234189 Score = 125 bits (138), Expect = 7e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| || || ||||||||| | || || || | Sbjct 37620764 AAACATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCC 37620705 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | | | |||| | || | || || | ||||| || |||||||| | | Sbjct 37620704 AAGTGACACCATCGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTG 37620646 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || |||||||||||||| || | ||||||||| |||| Sbjct 37620645 ACCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCAGACT 37620586 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| |||| || || || || |||| | || || ||| Sbjct 37620585 ACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTTAGAGGTGGC 37620533 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| || || ||||||||| | || ||||| | | Sbjct 21620120 AATGCAGATCTTTGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGCCAAG 21620061 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||| | || || | ||||| || ||||||||| | || || Sbjct 21620060 TGACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCA 21620001 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | ||||||||| |||||||| Sbjct 21620000 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAA 21619941 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| |||| || || || || |||| ||||||| || Sbjct 21619940 CATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGG 21619893 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||||||| | || ||||| | | Sbjct 37620532 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTCGAGCCAAGT 37620473 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | || || | ||||| || ||||||||| | || ||| Sbjct 37620472 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 37620413 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 37620412 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 37620353 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| |||| || || || || |||| ||||||| || Sbjct 37620352 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGG 37620306 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || ||||| | | Sbjct 21620347 ATGCAGATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTGGAGGTCGAGCCAAGT 21620288 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | || || | ||||| || ||||||||| | || ||| Sbjct 21620287 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 21620228 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 21620227 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 21620168 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| |||| || || || || |||| ||||||| || Sbjct 21620167 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGG 21620121 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || |||||||| | |||||||| | || |||| || |||||||||||||| Sbjct 37620014 GACAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAA 37619955 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | || |||||| ||||||||||||||||||||| |||| || || || || || Sbjct 37619954 GATGGCCGTACCCTCTCAGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTG 37619895 Query 40903 CGCTTGAGGGGCGG 40916 || | || ||||| Sbjct 37619894 CGTCTTAGAGGCGG 37619881 >seq4 Length=75030901 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||||||||| || ||||| ||||| ||||||| || || ||||| Sbjct 61466013 GGAGAGCGTGTGGTGGCCTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCCTTCGCT 61466072 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| ||||| | ||||| |||||||| ||||| ||||||||||||||| Sbjct 61466073 TCCATCTTCTGGCTGAAGAAGAGGGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 61466132 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 61466133 ATCAGCAGAGACGAGG 61466148 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||||||||| || ||||| ||||| ||||||| || || || || Sbjct 61475909 GGAGAGCGTGTGGTGGCCTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCCTTTGCT 61475850 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||| ||||| ||||||||||||||| Sbjct 61475849 GCCATCTTCTGGCTGAAGAAGAGGGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 61475790 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 61475789 ATCAGCAGAGACGAGG 61475774 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||||| || || ||||| || |||||||| ||||||| |||| Sbjct 61476694 GAGCCACTGCTGAAAGAGAACCCACGGCGTTTCGTCATCTTCCCCATCCAATACCAGGAC 61476635 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| ||||| || ||||||||||| || |||||||| | ||||||||| Sbjct 61476634 ATCTGGCAGATGTATAAGAAGGCCGAGGCTTCCTTCTGGACAGCAGAGGAGGTG 61476581 Score = 96.9 bits (106), Expect = 4e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||| ||||||||||||||| | ||| ||||||| |||| || | ||||| || Sbjct 61476507 AGGTCGACCTGTCCAAGGACCTGCAGC-ACTGGGAATCTCTGAAGGATGATGAGCGATAT 61476449 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| || || ||||||||||| |||||||| ||||| ||| Sbjct 61476448 TTCATCTCCCACGTGTTGGCCTTCTTTGCTGCCAGCGACGGTATCGTCAATGAGAACCTG 61476389 Query 116804 GT 116805 || Sbjct 61476388 GT 61476387 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||||||||||||| | || || | || |||||||| || || Sbjct 61476303 GGTGGAGCGCTTCACACAGGAGGTGCAGGTGACAGAAGCCAGATGTTTCTACGGTTTCCA 61476244 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||| ||| Sbjct 61476243 GATCGCCATGGAGAACATCCACTCTGAGATGTA--CAGCCTGCTGATCGACACCTAC 61476189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||||| || || || || || | || || || |||| |||| Sbjct 61463860 GAGCCACTGCTGAAGGAGAACCCTCGTCGCTTTGTTATCCTTCCTATCCAGTACCAGGAC 61463919 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| |||| || || ||||||||||| | ||||||||| Sbjct 61463920 ATCTGGCAGATGTACAAGCAGGCAGAAGCTTCGTTCTGGACGGCGGAGGAGGTG 61463973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/117 (77%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||||| || ||| | | || || | ||||||||||| || || Sbjct 61465619 GGTGGAGCGCTTCACTCAGGAAGTACAGATACCAGAAGCCAGATGCTTCTACGGTTTCCA 61465678 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||| ||| Sbjct 61465679 GATCGCCATGGAGAACATTCACTCTGAGATGTA--CAGCCTGCTGATCGACACCTAC 61465733 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||||||| | ||| |||||||| |||| ||| | || ||| Sbjct 61465422 AGGTGGACCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGATGATAAACAT 61465480 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| ||||| ||||||| || || ||||| ||||| || || | |||||| ||| Sbjct 61465481 TTCATCTCCTACGTGTTGGCCTTCTTTGCTGCCAGTGACGGTATTGTTATCGAGAACCTG 61465540 Query 116804 GT 116805 || Sbjct 61465541 GT 61465542 >seq19 Length=25483538 Score = 109 bits (120), Expect = 6e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||| |||| || | ||||||| | |||||||| | |||||||| || ||||||||| Sbjct 15265136 GAACCGTTGCTCCGAGTGAACCCCAGACGGTTCGTCGTCTTCCCCATCCAGTACCCGGAC 15265077 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || ||| | |||||||| |||| |||| || ||||||||||| |||||||||| Sbjct 15265076 ATCTGGAGGATGTACAAGCAGGCGCAGGCTTCATTCTGGACCGTGGAGGAGGTGG 15265022 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| || ||||| || || || || |||||||||||||| |||||| || || Sbjct 15262110 GGAGAGCGGCTTGTGGCTTTTGCAGCTGTGGAGGGCGTCTTCTTCTCGGGCTCGTTTGCT 15262051 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| | ||||| ||||| | || || ||||| ||||| || | ||||||||| Sbjct 15262050 GCCATCTACTGGCTGAAGAAGAGGGGTCTGATGCCTGGCCTCACCCACTCCAACGAGCTG 15261991 Query 117152 ATCTCCAGGGACGA 117165 ||| |||||| || Sbjct 15261990 ATCAGCAGGGATGA 15261977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515181221904720