Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 102 7e-17 seq11 100 2e-16 >seq6 Length=67274854 Score = 102 bits (112), Expect = 7e-17 Identities = 300/453 (66%), Gaps = 11/453 (2%) Strand=Plus/Plus Query 133512 gCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTT 133570 || ||||||||||| ||||||| ||| || |||| ||||| || || || || ||| Sbjct 22087481 GCTAGCTCGCAGCTCGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGAT-GTT 22087539 Query 133571 GACGAACCTGGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCA 133629 | ||| || || ||| ||| ||| ||| || | || | || || || |||| Sbjct 22087540 TAGCAACTGAGCCTCTGGGCTTTCGAAGG-GATAACGCATCAGGATGAAGGCATCTGCCA 22087598 Query 133630 AACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTC-GGCC 133688 |||| || | || | || || || | || || ||| | |||| | || || Sbjct 22087599 AACCTTGAACTCCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCAGGAA 22087658 Query 133689 GTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAA 133748 |||| |||| ||||| || |||| ||||||||| || ||| |||| ||| |||| | Sbjct 22087659 CTGGG-TAGTAGTTGATTTCAATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACA 22087717 Query 133749 TGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTC-GACGCACTTGTTGACGGC 133807 | |||| ||||||| ||| ||| || |||| || |||||| || Sbjct 22087718 GATGCCAGCTTCTTGAAGTCAAAAGTC----CGTTCTGGTGTGACGTACATGTTGAGAGC 22087773 Query 133808 AATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGC 133867 ||| ||| || ||||| || ||| ||||| | | | |||| || | |||| Sbjct 22087774 AATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGT 22087833 Query 133868 GCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATG 133927 ||| ||||||||||||||||||||||||| ||| | || || || | || || Sbjct 22087834 GCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACATGC 22087893 Query 133928 ATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 ||| ||||| |||||||| ||| || ||||| Sbjct 22087894 ATCTTTGTACAGCATGTATGGCGTTCCCGTTTC 22087926 >seq11 Length=48234189 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || ||||||||||| || | ||||| ||| || ||||| Sbjct 21620144 GTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTG 21620203 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | ||||||||| || || ||||| |||||||| || || Sbjct 21620204 CTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTT 21620263 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | || | |||||| | ||||||||| | ||| | || || || || Sbjct 21620264 AGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCAGT 21620323 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||||||| Sbjct 21620324 AAGGGTCTTGACAAAGATCTGCATG 21620348 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || ||||||||||| || | ||||| ||| || ||||| Sbjct 37620329 GTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTG 37620388 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | ||||||||| || || ||||| |||||||| || || Sbjct 37620389 CTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTT 37620448 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | || | |||||| | ||||||||| | ||| | || || || || Sbjct 37620449 AGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTACCAGT 37620508 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||||||| Sbjct 37620509 GAGGGTCTTGACAAAGATCTGCATG 37620533 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || ||||||||||| || | ||||| ||| || ||||| Sbjct 21619916 GTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTG 21619975 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | ||||||||| || || ||||| |||||||| || || Sbjct 21619976 CTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTT 21620035 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | || | |||||| | ||||||||| | ||| | || || || || Sbjct 21620036 AGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCTGT 21620095 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 21620096 GAGGGTCTTGACAAAGATCTGCAT 21620119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433799220744724