Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 8e-15 >seq11 Length=48234189 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| | ||| || ||||| | || || ||||| ||||||||||| || Sbjct 37620305 TCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGA 37620364 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||||||||| || || || |||| |||||| || ||| Sbjct 37620365 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 37620424 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| ||| || ||||| | || | || | || | | |||| Sbjct 37620425 GATGCCTTCCTTGTCCTGGATC-TTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGA 37620483 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| || || ||||| || || |||||||||||||| Sbjct 37620484 CCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 37620532 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| || ||||| | || || ||||| ||||||||||| || Sbjct 21619893 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 21619952 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || |||| |||||| || ||| Sbjct 21619953 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 21620012 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||| || ||||| | || | || | || | | ||||| Sbjct 21620013 ATGCCTTCCTTGTCCTGGATC-TTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGAC 21620071 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || ||||| || || |||||||||||||| Sbjct 21620072 CTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAGATCTGCAT 21620119 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| | ||| || ||||| | || || ||||| ||||||||||| || Sbjct 21620120 TCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGA 21620179 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||||||||| || || || |||| |||||| || ||| Sbjct 21620180 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 21620239 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| ||| || ||||| | || | || | || | | |||| Sbjct 21620240 GATGCCTTCCTTGTCCTGGATC-TTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGA 21620298 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| || || || || || || |||||||||||||| Sbjct 21620299 CCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATCTGCAT 21620347 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||| ||||| || || Sbjct 37620570 TCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 37620629 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || |||| ||||||||| || | || |||||||| ||| || ||||| | | Sbjct 37620630 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATC-TTGGCTTTCACGTT 37620688 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || |||| |||||||| || || ||||| || || || Sbjct 37620689 CTCGATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGAC 37620748 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 37620749 AAAGATCTGCAT 37620760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323048780916320