Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq13 138 8e-28 seq18 131 1e-25 >seq13 Length=45871076 Score = 138 bits (152), Expect = 8e-28 Identities = 374/561 (67%), Gaps = 15/561 (3%) Strand=Plus/Plus Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922 ||||||||||||| || ||||| ||||||||| | | || | || || ||||||| Sbjct 22309379 CCTGCTTCCCCAACGTATTCATCGCCAGTAAGCTAGAAAGCGTCATATACGCATCCTGGT 22309438 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA-TGG 107981 |||| || || || || |||||||| ||| | || |||| | |||| ||| ||| Sbjct 22309439 CCAGGGTACAGGCAGATCTGAACTGCATGAAGGATCTGCTGTA-CTCTCACATCCAGTGG 22309497 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 | ||| | || || || || || |||||||| |||| || || || || ||||| Sbjct 22309498 ACTTACCTGCTCAACACCTGTGGTACAGACTTTTCCATTAAAACAAACAGAGAAATGGTG 22309557 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCC 108101 ||| || || || || || | |||||| |||| |||||| | ||||| | Sbjct 22309558 AAGGCTCTGAAAGCCTTAAATGGGAGAAACAGTCTGGAAACTGAGGCCACCGGTGAGTAC 22309617 Query 108102 aaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGT-ACCCTACCAGC-A 108159 |||||| | ||||| | |||| | | || |||| || ||| | | || | Sbjct 22309618 AAAAAAGTTTGCTGGCAGTACCATCACAATGTCACAG--ACGATGTCATCAGGACATCTG 22309675 Query 108160 AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGG 108219 || ||| ||| |||| || || ||||||||| |||| |||||||| |||||| Sbjct 22309676 TGAGGAA-GACTCTCCACCCATCAACAGCCCCATGTTCTCAGGAAATGCCTACATTGTGG 22309734 Query 108220 CCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC--TGGTTGA 108277 | ||||||||||| ||||||| | || | | || | |||| | | || Sbjct 22309735 TTACAAGAGCCTTTGTCAAACATGTGATGGAGGA--CAAAGTTGTGCAGACCTTTTTAGA 22309792 Query 108278 ATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCT 108335 | || |||||||| | || ||||| || ||| | |||||||| || ||| | ||| Sbjct 22309793 GTAGGAGAAAGACACACACAGACCCGATGAGCACTTGTGGGCCACTCTACAGAGGATGCC 22309852 Query 108336 CCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 | || | ||||| || || ||| | || || ||| |||| |||||||||| |||| Sbjct 22309853 CTCTG--TTCCTGGATCAGTGCCTGCCAACATCAGGTACGACATGTCAGACATGAATGCC 22309910 Query 108396 ATCGCCAGGCTCGTCAAGTGG 108416 |||| | | || |||||| Sbjct 22309911 CTCGCACGTGTTGTGAAGTGG 22309931 Score = 122 bits (134), Expect = 6e-23 Identities = 125/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771 || || ||||| | ||| ||||| ||||||||||||| || | |||||||| || || Sbjct 22308898 TTTCCTATTGCATTCTCCGTGGTGATCCATGAGAAGATCGAGATATTTGAACGACTCCTC 22308957 Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCC-AGA 107830 || ||| | || || ||||||||||| ||||| ||||| ||||| ||| ||||| | Sbjct 22308958 CGTGCCATTTACGCTCCTCAGAACATCTACTGCGTCCATGTGGACCAGAAATCCCCTCGG 22309017 Query 107831 GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCC 107871 || |||||||| ||| || ||||| || || |||||||||| Sbjct 22309018 GATTTTCAAAG-GGCTGTGAAGGCGATCATGTCCTGCTTCC 22309057 >seq18 Length=37194005 Score = 131 bits (144), Expect = 1e-25 Identities = 231/335 (69%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||||||||| || ||||| ||| | ||||| |||||||| || || |||||||||||| Sbjct 23491926 AACTTTGAACGTCTACTGCGGGCCATCTATGCACCTCAGAATATTTATTGTGTCCACGTG 23491985 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || || || | | || | | | || || ||||||| | |||||| |||||| Sbjct 23491986 GACAAAAAATCTGCCCCGTCTGTAACATCTGCCATCCAGGCCATCACTTCCTGTTTCCCC 23492045 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 || |||||||||| ||| || |||| || || || || |||||| | || ||| Sbjct 23492046 AACGTCTTCATGGTCAGCGAGGCGGTCAGTGTTGTGTACGCTGGCTGGTCTCGCGTCCAA 23492105 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCC--ATGGAAGTACTTAC 107991 ||||| ||||||||||||| ||| | | | | ||||||| |||||| ||||| Sbjct 23492106 GCTGATCTGAACTGTATGGCTGACCTTTACTATGG--CAGTGCCAAATGGAAATACTTCA 23492163 Query 107992 TGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCA 108051 | || || || |||||||| | || ||||| |||||||| | || Sbjct 23492164 TCAACCTCTGTGGCCAGGACTTCCCTCTGAAAACCAACTTGGAGATGGTTCGAATGCTGC 23492223 Query 108052 AGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG 108086 || ||||||| | ||||| ||||||| ||| Sbjct 23492224 AGTCACTGAAGGGCAGCAACAGCTTGGAGTCAGAG 23492258 Score = 125 bits (138), Expect = 5e-24 Identities = 231/335 (69%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||||||||| || ||||| ||| | ||||| |||||||| || || |||||||||||| Sbjct 23473181 AACTTTGAACGTCTACTGCGGGCCATCTATGCACCTCAGAATATTTATTGTGTCCACGTG 23473240 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || || || | || | | | || || |||||| | |||||| |||||| Sbjct 23473241 GACAAAAAATCTGCCCCTTCTGTAACATCCGCCATCCTGGCCATCACTTCCTGTTTCCCC 23473300 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 || |||||||||| ||| || |||| || || || || |||||| | || ||| Sbjct 23473301 AACGTCTTCATGGTCAGCGAGGCGGTCAGTGTTGTGTACGCTGGCTGGTCTCGTGTCCAA 23473360 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCC--ATGGAAGTACTTAC 107991 ||||| ||||||||||||| ||| | || || || |||| || |||||| ||||| Sbjct 23473361 GCTGATCTGAACTGTATGGCTGACCT-CTACAACGC-CAGTACCAAATGGAAATACTTCA 23473418 Query 107992 TGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCA 108051 | || || || |||||||| | || ||||| |||||||| | || Sbjct 23473419 TCAACCTCTGTGGCCAGGACTTCCCTCTGAAAACCAACTTGGAGATGGTTCGAATGCTGC 23473478 Query 108052 AGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG 108086 || ||||||| | ||||| ||||||| ||| Sbjct 23473479 AGTCACTGAAGGGCAGCAACAGCCTGGAGTCAGAG 23473513 Score = 125 bits (138), Expect = 5e-24 Identities = 231/335 (69%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||||||||| || ||||| ||| | ||||| |||||||| || || |||||||||||| Sbjct 23484747 AACTTTGAACGTCTACTGCGGGCCATCTATGCACCTCAGAATATTTATTGTGTCCACGTG 23484806 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || || || | || | | | || || |||||| | |||||| |||||| Sbjct 23484807 GACAAAAAATCTGCCCCTTCTGTAACATCCGCCATCCTGGCCATCACTTCCTGTTTCCCC 23484866 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 || |||||||||| ||| || |||| || || || || |||||| | || ||| Sbjct 23484867 AACGTCTTCATGGTCAGCGAGGCGGTCAGTGTTGTGTACGCTGGCTGGTCTCGTGTCCAA 23484926 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCC--ATGGAAGTACTTAC 107991 ||||| ||||||||||||| ||| | || || || |||| || |||||| ||||| Sbjct 23484927 GCTGATCTGAACTGTATGGCTGACCT-CTACAACGC-CAGTACCAAATGGAAATACTTCA 23484984 Query 107992 TGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCA 108051 | || || || |||||||| | || ||||| |||||||| | || Sbjct 23484985 TCAACCTCTGTGGCCAGGACTTCCCTCTGAAAACCAACTTGGAGATGGTTCGAATGCTGC 23485044 Query 108052 AGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG 108086 || ||||||| | ||||| ||||||| ||| Sbjct 23485045 AGTCACTGAAGGGCAGCAACAGCCTGGAGTCAGAG 23485079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348243770030178