Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq11 105 5e-18 >seq11 Length=48234189 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | | || | ||| || ||| ||||||||| ||||||||||| Sbjct 37620533 GCCACCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 37620592 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| ||||| || || || |||| || ||| ||||| ||||| Sbjct 37620593 GAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 37620652 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || || || | | | | |||| | ||| || Sbjct 37620653 GATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCACTTGGCTCAAC 37620712 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| ||| || ||||| || || || ||||| |||||||| |||||||| Sbjct 37620713 CTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 37620763 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | || | ||| || ||| ||||||||||||||||||||| Sbjct 21620121 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 21620180 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || || || || || || |||| || ||| || || || || Sbjct 21620181 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 21620240 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || || || | | | | |||| | ||| ||| Sbjct 21620241 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACC 21620300 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||| || ||||| || || || ||||| |||||||| |||||| || Sbjct 21620301 TCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATCTGCATGATG 21620351 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | || | ||| || ||| ||||||||||||||||||||| Sbjct 37620306 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 37620365 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || || || || || || |||| || ||| || || || || Sbjct 37620366 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 37620425 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || || || | | | | |||| | ||| ||| Sbjct 37620426 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACC 37620485 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||| || ||||| || || || ||||| |||||||| |||||| Sbjct 37620486 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATG 37620533 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | || | ||| || ||| ||||||||||||||||||||| Sbjct 21619893 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 21619952 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || || || || || || |||| || ||| || || || || Sbjct 21619953 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 21620012 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || || || | | | | |||| | ||| ||| Sbjct 21620013 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACC 21620072 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 21620073 TCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAGATCTGCAT 21620119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395046806068837