Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 392 3e-104 seq11 156 4e-33 >seq6 Length=67274854 Score = 392 bits (434), Expect = 3e-104 Identities = 1053/1595 (66%), Gaps = 41/1595 (3%) Strand=Plus/Plus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 ||| |||||| || | | |||| ||||||| ||| ||| | || || | || ||| Sbjct 22087163 TCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTAACAATCTGGAAC 22087222 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || || | ||| | ||| ||| |||||| ||| | | ||||| || || ||| Sbjct 22087223 TCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTG 22087282 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || |||||||| || | ||| || |||||| Sbjct 22087283 TTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGCAGCAGGCTATTTCTC 22087342 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTG-AGCATCGACCAGTCCCACAGATCGGACGGCGT 22647 | ||| || || | || || ||||| |||| | |||||||||||| || | ||||| Sbjct 22087343 ACGCCATGTTTAGCGATCTT-CTCTTTCAGCAGCTTCCAGTCCCACAGGTCTGTAGGCGT 22087401 Query 22648 CACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGT 22707 | ||||||||||| |||||||||| | ||| || | ||| |||||||| || Sbjct 22087402 C---TTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGAACCTTCGTAGGT 22087458 Query 22708 TTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 |||||||| || | || || || |||||||||||||||| || |||| || || Sbjct 22087459 CTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTCCAGAGCAGCGTAGTAGAT 22087518 Query 22768 AGTCTCGAAGATTTTCTTGTT---CAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG 22824 ||||| || || | |||| ||| | || | | | |||||| | || ||| Sbjct 22087519 GGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGG---CTTTCGAAGGGATAACG 22087575 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||||| | ||| || || |||| ||| ||||| || || || || || | || | Sbjct 22087576 CATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCTGTGGCGCTT 22087635 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCT-GTTCAAGT 22943 || ||| | || || || | || || | || || | | || || ||| | || Sbjct 22087636 GTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTT-GATTTCAATGACCTTGTTGAGGT 22087694 Query 22944 TTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT--G 23001 || || | || ||| || | | ||||| ||| | ||| | | Sbjct 22087695 TTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTC--AAAAGTCCGTTCTGG 22087752 Query 23002 TACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA 23061 | || || |||||| || || |||||||| || || || ||||||||||||||| Sbjct 22087753 TGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCT 22087812 Query 23062 CGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTG 23121 |||||||| |||| |||||| || || ||||| || || || ||||||| ||| ||| Sbjct 22087813 GGTGTACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTG 22087872 Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 ||| || || | || || | ||| ||||| |||||||| ||||| ||||| || ||| Sbjct 22087873 GTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTG 22087932 Query 23182 CGACTCGATGATCGCTCGCCACATAGTCTGAGCGT---GAACACGTCGCACGTACCTGCC 23238 ||||| || || || ||| | |||||| | ||||| ||| ||| || Sbjct 22087933 GGACTCAATAATGGCATACCAGAGCTGCTGAGCCTTCACCACACGCTTCAC---CCTCCC 22087989 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298 || | || || || ||||| ||||| || | || | || ||| |||| || Sbjct 22087990 CTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCC 22088049 Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 || | | | |||||||| || ||| || || | | || || | |||| || Sbjct 22088050 AGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATGAA 22088109 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 ||||| || ||||| || || ||||| || || | ||| | | |||||| || || || Sbjct 22088110 CAGATCTGGAATCCACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGT 22088169 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 |||||| |||| |||| ||||| ||||| || ||||| ||||| ||||| | ||| Sbjct 22088170 GTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGC 22088229 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 ||| || || ||||| || || || |||||||| || || || || || |||||||| || Sbjct 22088230 AAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAAAC 22088289 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACC 23595 ||| | ||| ||||| || |||||||| || || || | ||| || Sbjct 22088290 TCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCTC---CC 22088346 Query 23596 TTTTGCTC-GAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 ||| || || ||| || | || ||||||||| | ||||| || || | | Sbjct 22088347 GGTTGATCTGATACAGCTGACCG-CCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGG 22088405 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGA 23714 | || || || |||||||| || ||||| ||||||||||| ||||| | |||| | || Sbjct 22088406 CACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGA 22088465 Query 23715 AACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCG 23774 | || |||| || | | || | || ||| || || || |||||| | Sbjct 22088466 AGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGG 22088525 Query 23775 TAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTC-CTC 23829 | || ||| ||| |||| || |||||||| || ||||| ||||| ||||| ||| Sbjct 22088526 TGAA----CCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTC 22088581 Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCC 23889 | | || || || | | || | ||| | ||||| || || | |||| || || Sbjct 22088582 T-CATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCC 22088640 Query 23890 GTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAA 23949 || || || | |||||| || || | || ||||| || || || ||| || || Sbjct 22088641 ATTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAA 22088700 Query 23950 GTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 || | |||| | |||||||||||| | |||| Sbjct 22088701 ATCTCTGTCGTAAATTATGGCCGAATTGAGGCGGT 22088735 >seq11 Length=48234189 Score = 156 bits (172), Expect = 4e-33 Identities = 128/156 (82%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| ||||||| || || || ||||| || ||| ||||||| || | ||| | Sbjct 16878333 TTTCCACTCGTTTCATAAAGAGGTCTGGGATCCACAGTGCGAAGAACAGATCTCTGGCCC 16878274 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || |||||||||||| |||||||| |||| ||||||||||| |||||||| | ||||| Sbjct 16878273 GCTGCTCCTCTTTGCCCGTGTTCTTCTTCAGTTCCAAAAAGTCAAACACGTCTGAATGCC 16878214 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || |||||||| || ||||||| Sbjct 16878213 ACGGCTCCAGGTACACAGCAAACGCCCCGGGTCTCT 16878178 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| || ||| ||||||||||| || || || || |||||||| | || || ||| Sbjct 16878789 ACCTCATCCTTGTTTGTGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTG 16878730 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || | ||||| | ||||||||||||||||||||||| Sbjct 16878729 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTT 16878670 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || || || ||||||||||||||| || ||||| Sbjct 16878669 CCGGTTTCTGTCTGCGACTCGATGATAGCGTACCACA 16878633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || || || || |||||| | || ||||| | Sbjct 37620765 CAAACATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGC 37620706 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| |||| | || ||| | || ||||||||||||| | || || | Sbjct 37620705 CAAGTGACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTG 37620646 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| | || || || |||||||||||| ||||||| Sbjct 37620645 ACCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGA 37620606 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || |||||||| ||||| | || | ||| ||| |||||| ||| ||| |||| Sbjct 16879715 ACCTGAAACTCCCCGGAGAGAACCCTGCGAGTGTAGATGTTGCTGGTGTACGCCTCGATG 16879656 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 || |||||||| ||||| ||||||||||| || || || ||||||||||||| || || Sbjct 16879655 GACTCATTGTTGCCCAGAATCTGAGCGGTGGAGGCTGTGGGCATCGGCGCCATGAGCAGA 16879596 Query 22580 GAGTTTCTCAAGCCGTGC 22597 ||| |||| |||||| Sbjct 16879595 CTGTTCCTCACTCCGTGC 16879578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445733541444240