Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 627 1e-174 seq4 105 8e-18 seq11 84.2 3e-11 >seq6 Length=67274854 Score = 627 bits (694), Expect = 1e-174 Identities = 1313/1949 (67%), Gaps = 27/1949 (1%) Strand=Plus/Plus Query 62322 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGG 62381 || ||||| ||||| || |||| | |||| || | || | || || || || Sbjct 22087148 CTGTTCTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGA 22087207 Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441 ||||| | ||||| |||||||| | || || |||||||| || || ||||| || | | Sbjct 22087208 TTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCT 22087267 Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501 || | ||||| || || |||| || || || || || || || ||||| || || | | Sbjct 22087268 TCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGC 22087327 Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAA 62561 | | |||||||| | || | | | ||| || ||||| || | | ||| | ||| Sbjct 22087328 AGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCCAGTCCCAC 22087387 Query 62562 AGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC 62614 || || | || | | ||| ||||| || || || || ||| | Sbjct 22087388 AGGTCTGTAGGCGTCTTGTCCCACATGTCG-------TATTGCAGGATGCCCTTGCTGAC 22087440 Query 62615 GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTC 62674 || ||| | || || || || ||||| || ||||||| | || |||||||| Sbjct 22087441 AGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTC 22087500 Query 62675 TAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCT 62734 | ||| |||| || ||||| ||||| |||| | ||||| || || || ||||| Sbjct 22087501 CAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCT 22087560 Query 62735 ATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGAT 62794 || || |||||| | || || || || || || || |||||||| ||||| || || Sbjct 22087561 TTCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTAT 22087620 Query 62795 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62854 || || || | ||| || || | |||||||| |||| || || || || || || || Sbjct 22087621 TGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAAT 22087680 Query 62855 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62914 | || ||||| ||| ||||||| |||||| |||| ||| || || ||||| Sbjct 22087681 GACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTCAAA 22087740 Query 62915 TCGCCCATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTAC 62971 || ||| | || ||||||| | |||| || || || |||||||| || || Sbjct 22087741 AGTCCGTTCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCAC 22087800 Query 62972 CTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 ||| | | || | || | | | || ||||| || || || || ||||| || Sbjct 22087801 CTCGTCTTTGCTGGTG--TACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTG 22087858 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63089 || | ||| || || |||||||| ||||||| ||||| || || || ||| |||| || Sbjct 22087859 CCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTT 22087918 Query 63090 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGA 63148 || ||||| |||| || || ||||| || | ||||| | || ||||||| | | | Sbjct 22087919 CCCGTTTCTGTCTGGGACTCAATAATGGCATACCAGAGCTGCT-GAGCCTTCACCACACG 22087977 Query 63149 TTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63208 || |||| || |||| ||| ||| |||| | ||| ||||| || ||||| Sbjct 22087978 CTTCACCCTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCA 22088037 Query 63209 ATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63268 | ||||| | |||||| || | |||||||| | ||||| | | || | || ||| Sbjct 22088038 CTCGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCAC 22088097 Query 63269 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTT 63327 || ||||| || ||||| |||||||| || || ||| || || ||||| | ||| || | Sbjct 22088098 TCTCTTCATGAACAGATCTGGAATCCACAGGGC-ATAGAAGAGGTCTCTGGCTCTCTGCT 22088156 Query 63328 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63387 |||| |||||||| ||||| || || || ||||| | | | |||| | ||||| || | Sbjct 22088157 CCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCT 22088216 Query 63388 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63447 ||| ||| ||||| | ||||||| | |||||| || |||||||| | || | ||| | Sbjct 22088217 CCAGGTACATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAG 22088276 Query 63448 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA 63507 | || || |||||||||||||| || | | ||||| || ||||||||||||| | || Sbjct 22088277 TATTGTTGTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGA 22088336 Query 63508 TATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63567 | |||| || | | | ||| || | | | || || || || || ||| | Sbjct 22088337 TGTAGCTCCCGGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGG 22088396 Query 63568 AGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 | || | || || | || | |||||||| |||||||| ||||| || || ||||| Sbjct 22088397 AAATGAGGGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGG 22088456 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 || || || ||||| |||| || | || | ||||| || || || | ||| || | Sbjct 22088457 CGAGGAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTG 22088516 Query 63688 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63747 | ||||| || ||||| || || || || || |||||||||||||| |||| || || | Sbjct 22088517 AGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGT 22088576 Query 63748 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTT 63807 | | | ||| || || || | || | ||| | ||||||||| || | || | | || Sbjct 22088577 CTCTCTCATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTT 22088636 Query 63808 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 63867 | || || |||| || ||||| |||| ||||| || || || ||||||| | Sbjct 22088637 TTCCATTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAG 22088696 Query 63868 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATAT 63927 | || |||| |||||||| || |||||||||| || || | | ||| || | Sbjct 22088697 AGAAATCTCTGTCGTAAATTATGGCCGAATTGAGGCGGTCTTTGTTCTCCAGAACAATGT 22088756 Query 63928 CCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 63987 | || |||| || || || || || | | || |||||| | |||||| Sbjct 22088757 TGAGCGTCTCTTTTGAGATCATGGGGGAGTGCTGCTTGTTCAGAGGATTGATGTAGTTGT 22088816 Query 63988 ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGG 64047 | | || ||||||||||||||||| | |||||| || || ||||| || ||||| | | Sbjct 22088817 ACAGGTCTTCCATCACTTCACTAAACACTTTTTTCGTCTCTTTGTGGAGGTTTGAGACAG 22088876 Query 64048 CTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTT 64107 | || || ||||| ||||||||||| || || |||| || || ||||| || |||| Sbjct 22088877 CGATCCTTGCGGCGAGAATGGCATAGTCGGGGTGTTTAGTTGTCAGTGTGGCAGCAATTT 22088936 Query 64108 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCT 64167 |||||||||| ||||| | || || || || || || | || | || || || |||| Sbjct 22088937 CGGCTGCCAGCGTGTCAAGCTCCACAGTGGTGACACCGCTGTACAAACCCTGGATCACCT 22088996 Query 64168 TCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCT-A 64226 |||| | |||| | ||||| | ||| | |||| || ||||| || |||| Sbjct 22088997 TCATTGTGATTTGAGCTGGATCCACGAAATCTGAATTTAGACCGTAGCA-AAGCTTCTGG 22089055 Query 64227 ATACGAGACGTGATTTTATCAAACATGAC 64255 || ||||| |||||||||||||||||||| Sbjct 22089056 ATGCGAGAGGTGATTTTATCAAACATGAC 22089084 >seq4 Length=75030901 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || |||||||| ||||| | ||| | Sbjct 61466148 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61466089 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||||||||| || ||||| ||||||||||| || || |||||||||| Sbjct 61466088 TCAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGG 61466029 Query 33724 C 33724 | Sbjct 61466028 C 61466028 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || |||||||| ||||| | ||| | Sbjct 61475774 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61475833 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| ||| || || ||||| ||||||||||| || || |||||||||| Sbjct 61475834 TCAGCCAGAAGATGGCAGCAAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGG 61475893 Query 33724 C 33724 | Sbjct 61475894 C 61475894 >seq11 Length=48234189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 ||||| || || | ||| || || ||||| || ||||| || || || || | ||||||| Sbjct 16877663 CCCGCGTTGAACAGGGTGGGGGACGCGTGGGTGAACCACTTCTCTGACAGCAAATTGTAC 16877604 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 ||||||||||| | || | || | | |||||| || |||| || | ||| | |||| Sbjct 16877603 GTCTCAATAGCCGCATCGACGTCTCCCTTATGAATCCCCACTGACACTCTCATCAGCATG 16877544 Query 63786 TGCTGAGGTCTTTCAACAA 63804 ||||| || || ||| ||| Sbjct 16877543 TGCTGGGGCCTCTCAGCAA 16877525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629771174570160