Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 246 3e-60 >seq6 Length=67274854 Score = 246 bits (272), Expect = 3e-60 Identities = 917/1427 (64%), Gaps = 9/1427 (1%) Strand=Plus/Plus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 ||||| ||||| |||| ||| || |||||||| | || || | || || || ||||| Sbjct 22087199 AGGTGAGGATTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTG 22087258 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||| |||||||| || |||| | || || | || || || || ||||| Sbjct 22087259 GTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATC 22087318 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || ||||||||||||| |||||| || || ||| ||| || ||| Sbjct 22087319 GGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTC 22087378 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||||| | ||||| || |||| |||||| || ||||| || || || || || Sbjct 22087379 CAGTCCCACAGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTG 22087438 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | || ||| | | || ||||| || |||||| | |||||| ||||| || | Sbjct 22087439 ACAGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCC 22087498 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || || || || || || || || ||||| || || |||| | | || ||| | Sbjct 22087499 TCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGG 22087558 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || ||||| | ||| | || | || || |||| |||||||| ||||| || || ||| Sbjct 22087559 CTTTCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCT 22087618 Query 37543 ATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCT 37602 || || || || ||| || || | | ||| ||||| || || ||||| || Sbjct 22087619 ATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCA 22087678 Query 37603 ATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CA 37660 || | || || || ||||| || | | ||| || | | || ||| | ||| || Sbjct 22087679 ATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTCA 22087738 Query 37661 TAAATACGTTATTAT-TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 || | |||| | | | || | | | | | ||| || | || ||||| || || Sbjct 22087739 AAAGTCCGTTCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCC 22087798 Query 37720 ACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 || || |||| | | | | | | || || || || || || || || | || || Sbjct 22087799 ACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTG 22087858 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 |||| ||| || || || | ||||| | |||||| || || || || |||||| Sbjct 22087859 CCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTT 22087918 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGA-TCG 37897 || |||| | || | ||| ||||| | | ||| | || || || || || | || Sbjct 22087919 CCCGTTTCTGTCTGGGACTCAATAATGGCATACCA-GAGCTGCTGAGCCTTCACCACACG 22087977 Query 37898 CTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA 37957 | || | | || |||| |||| | || | ||| | ||| || | |||||| Sbjct 22087978 C-TTCACCCTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGC 22088036 Query 37958 CATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTA 38017 ||| | || ||||| ||| ||||||||||| ||||| | || | | || | Sbjct 22088037 ACTCGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCA 22088096 Query 38018 CGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATT 38077 | | | ||| || | ||| || | ||| | ||| || | ||| ||| ||| | | Sbjct 22088097 CTCTCTTCATGAACAGATCTGGAATCCACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCT 22088156 Query 38078 CTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGT 38136 | || || ||| ||| ||||| |||| || || || || | |||| ||||||||| Sbjct 22088157 CCTCCTTTCCTGTGTTC-TTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGC 22088215 Query 38137 TCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACT 38196 || | || || | | ||||| |||||||| | || ||||||| || ||| | | | Sbjct 22088216 TCCAGGTACATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCA 22088275 Query 38197 GTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGAT 38256 || || || || | ||| ||||| || || | || || || || || || |||| | Sbjct 22088276 GTATTGTTGTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCG 22088335 Query 38257 ATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTT 38316 || || | || | | || ||| || | || || || || || || || ||| Sbjct 22088336 ATGTAGCTCCCGGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTG 22088395 Query 38317 GATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATT 38376 || || | || || || || | || ||| | || ||||| || ||||| || || || Sbjct 22088396 GAAATGAGGGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATG 22088455 Query 38377 GGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGA 38436 | || | || || || |||| || ||| ||||| ||||| || | || || Sbjct 22088456 GCGAGGAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGT 22088515 Query 38437 GATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATA 38496 || || || ||||||| || || |||| || || || || || | |||| || Sbjct 22088516 GAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATG 22088575 Query 38497 TCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 || | | || || || | ||| |||||||| ||||| || || || Sbjct 22088576 TCTCTCTCATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGG 22088622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468490263865680