Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 607 1e-168 seq11 84.2 3e-11 >seq6 Length=67274854 Score = 607 bits (672), Expect = 1e-168 Identities = 1303/1942 (67%), Gaps = 13/1942 (1%) Strand=Plus/Plus Query 65115 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 65174 || ||||| ||||| || |||| | |||| || | || | || || || ||| Sbjct 22087148 CTGTTCTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGA 22087207 Query 65175 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 65234 ||||| | || || |||||||| | || || |||||||| || || ||||| || | | Sbjct 22087208 TTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCT 22087267 Query 65235 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 65294 || | ||||| || || |||| || || || || || || || ||||| || || | | Sbjct 22087268 TCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGC 22087327 Query 65295 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 65354 | | |||||||| | || | | | ||| || ||||| || | | ||| | ||| Sbjct 22087328 AGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCCAGTCCCAC 22087387 Query 65355 AGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGAT 65414 || || | || ||| || || || || ||| | || Sbjct 22087388 AGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGAA 22087447 Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| | || || ||||| ||||| || ||||||| || || |||||||| | ||| Sbjct 22087448 CCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTCCAGAGCA 22087507 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 |||| || ||||| || || |||| | ||||| || || || |||| || || Sbjct 22087508 GCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCTTTCGAAG 22087567 Query 65535 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 65594 |||||| | || || || || ||||| || |||||||| ||||| || || || || Sbjct 22087568 GGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCTG 22087627 Query 65595 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 65654 || | ||| || || | |||||||| |||| || || || || || || || | || Sbjct 22087628 TGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAATGACCTTG 22087687 Query 65655 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGC 65711 ||||| ||| ||||||| |||||| |||| ||| || || ||||| || Sbjct 22087688 TTGAGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTCAAAAGTCCGT 22087747 Query 65712 TCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT-- 65769 || | | || ||||||| | |||| || || || ||||| || || ||||| | Sbjct 22087748 TCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCT 22087807 Query 65770 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 65829 | || | || | | | || ||||| || || || || |||||||| || | || Sbjct 22087808 TTGCTGGTG--TACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGAT 22087865 Query 65830 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 65889 | || || |||||||| ||||||| ||||| || || || ||| |||| || || |||| Sbjct 22087866 TCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTT 22087925 Query 65890 CAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTAT 65948 | |||| || || ||||| || | ||||| | || ||||||| | | | || Sbjct 22087926 CTGTCTGGGACTCAATAATGGCATACCAGAGCTGCT-GAGCCTTCACCACACGCTTCACC 22087984 Query 65949 CTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 66008 ||| || |||| ||| || |||| | ||| ||||| || ||||| | |||| Sbjct 22087985 CTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCC 22088044 Query 66009 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 66068 | |||||||| || | |||||||| | ||||| | | || | || ||||| ||| Sbjct 22088045 AGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTC 22088104 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTT 66127 || || ||||| |||||||| || || ||| || | ||||||| ||| || ||||| || Sbjct 22088105 ATGAACAGATCTGGAATCCACAGGGC-ATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTT 22088163 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 |||||| ||||| || || || ||||| | | | |||| | ||||| || |||| ||| Sbjct 22088164 TCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTA 22088223 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 ||||| | ||||||| | |||||| || |||||||| | || | ||| || || || Sbjct 22088224 CATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTT 22088283 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 |||||||||||||| || | | || ||||| |||||||||| || | ||| ||||| Sbjct 22088284 GTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCT 22088343 Query 66308 TCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 || ||| | ||| || | | | || || || || || ||| || || | Sbjct 22088344 CCCGGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAG 22088403 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427 || || | || | || ||||| ||||| || || || || || ||||| || || Sbjct 22088404 GGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAG 22088463 Query 66428 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 || ||||| |||| || | || | ||||| || || || | ||| || || ||||| Sbjct 22088464 GAAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTG 22088523 Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547 || ||||| || || || || || |||||||||||||| |||| || || || | | Sbjct 22088524 GGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTCTC 22088583 Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607 ||| || || || | || | ||| | ||||||||| || | || | | || || Sbjct 22088584 ATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCATT 22088643 Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667 || |||| || ||||| |||| ||||| || || || ||||||| || || || Sbjct 22088644 GATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAATC 22088703 Query 66668 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 66727 || |||||||| || |||| ||||| || || | | ||| | | | || Sbjct 22088704 TCTGTCGTAAATTATGGCCGAATTGAGGCGGTCTTTGTTCTCCAGAACAATGTTGAGCGT 22088763 Query 66728 AATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATC 66787 |||| || || || || || | | || |||||||| |||||| | | || Sbjct 22088764 CTCTTTTGAGATCATGGGGGAGTGCTGCTTGTTCAGAGGATTGATGTAGTTGTACAGGTC 22088823 Query 66788 CTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 66847 ||||||||||||||||| | |||||| || |||||||| || ||||| || || || || Sbjct 22088824 TTCCATCACTTCACTAAACACTTTTTTCGTCTCTTTGTGGAGGTTTGAGACAGCGATCCT 22088883 Query 66848 AGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGC 66907 ||||| | ||||||||| || || |||| || || ||||| || ||||||||||| Sbjct 22088884 TGCGGCGAGAATGGCATAGTCGGGGTGTTTAGTTGTCAGTGTGGCAGCAATTTCGGCTGC 22088943 Query 66908 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 66967 ||| ||||| | || || || || || || | || | || ||||| |||||||| | Sbjct 22088944 CAGCGTGTCAAGCTCCACAGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATTGT 22089003 Query 66968 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAG 67026 |||| | ||||| | ||| | |||| || || || || |||| || |||| Sbjct 22089004 GATTTGAGCTGGATCCACGAAATCTGAATTTAGACCGTAGCA-AAGCTTCTGGATGCGAG 22089062 Query 67027 ATGTGATTTTATCAAACATGAC 67048 | |||||||||||||||||||| Sbjct 22089063 AGGTGATTTTATCAAACATGAC 22089084 >seq11 Length=48234189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| || || || ||||| || | || || | | Sbjct 16876973 CACTGAATACTTTCTTGGTTTCTTTGTGCAGGTTGGACACGGCAATACGTGCTGCCAGGA 16876914 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || ||||||| || || ||||| || | || || |||| ||||||| Sbjct 16876913 TTGCATAGTCAGGATGTTTAGTGGTGAGGGTGGCGGCCGTCTCTGCAGCCAAGGTGTCCA 16876854 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || || | || | || ||||| |||||||| Sbjct 16876853 GTTCCACGGTGGTGACGCCGCTGTACAGACCCTGGATCACCTTCAT 16876808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658124284437480