Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq8 136 3e-27 >seq8 Length=57680405 Score = 136 bits (150), Expect = 3e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || || | ||||||||||| || || || || || |||||||||||||| ||||| Sbjct 19731634 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGAAGAGCATAGCTGGCGATGTTGAACGGC 19731575 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 ||||| || ||||| ||||| || | |||||||||||| ||||||||||| || | Sbjct 19731574 ACCCCAAGACCCATATCGGCCGATCGCTGGTACAGCTGACAGGACAGCTCGCCATCACAG 19731515 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||| ||||| |||| | |||| || || || |||||||| | | |||||| Sbjct 19731514 ACGTAGAACTGGCACAGAGCGTGGCACGGGGGCAGAGCCATGAGGGGGAGGTC 19731462 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 ||||||| || ||||| || ||||||||||| |||||||| || |||||||| ||||| Sbjct 19730748 TGTACTCTGCACCAAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGATCCCCCTCCT 19730689 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAAT 21397 | |||| ||||||| | ||| |||||| |||||||||| || |||||||| Sbjct 19730688 CTCTGTCCGTGAAGCCCAGTTTGTCCAGAAAGGCCCGGGACCCGTTGGCATCCCAAAT 19730631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427745255872560