Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 600 2e-166 seq4 102 1e-16 >seq6 Length=67274854 Score = 600 bits (664), Expect = 2e-166 Identities = 1310/1949 (67%), Gaps = 27/1949 (1%) Strand=Plus/Plus Query 78994 CTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 79053 || ||||| ||||| || |||| | |||| || | || | || || || ||| Sbjct 22087148 CTGTTCTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGA 22087207 Query 79054 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGT 79113 ||||| | || || |||||||| | || || |||||||| || || ||||| || | | Sbjct 22087208 TTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCT 22087267 Query 79114 TCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACC 79173 || | || || || || |||| || || || || || || || ||||| || || | | Sbjct 22087268 TCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGC 22087327 Query 79174 AATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAG-AGATTCCCAATCCCA 79232 | | |||||||| | || | | ||| || ||||| || || |||| | ||||| Sbjct 22087328 AGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCC-AGTCCCA 22087386 Query 79233 AAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGA 79292 || || | || | ||| | || ||||| || || || || || | || Sbjct 22087387 CAGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGA 22087446 Query 79293 TCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGC 79352 ||| ||| || || || ||||| || | |||| || || |||||||| | || Sbjct 22087447 ACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTCCAGAGC 22087506 Query 79353 TCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAA 79412 |||| || ||||| || ||||||| | || || || || ||| |||| || || Sbjct 22087507 AGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCTTTCGAA 22087566 Query 79413 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 79472 |||||| | || || || || ||||| || |||||||| ||||| || || || || Sbjct 22087567 GGGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCT 22087626 Query 79473 ATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 79532 || | ||| || || | |||||||| |||| || || || || || || || | || Sbjct 22087627 GTGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAATGACCTT 22087686 Query 79533 ATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT---CG 79589 ||||| || |||| || |||||| |||| || || || ||||| || Sbjct 22087687 GTTGAGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTCAAAAGTCCG 22087746 Query 79590 TCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT- 79648 | | | | || ||||||| | || | || || || ||||| || || ||||| | Sbjct 22087747 TTCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTC 22087806 Query 79649 -TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAA 79707 | || | || | | | ||| ||||| ||||| || || || ||||| || | | Sbjct 22087807 TTTGCTGGTG--TACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGA 22087864 Query 79708 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTT 79767 || || || |||||||| ||||||| ||||| || || || ||| | || || || ||| Sbjct 22087865 TTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTT 22087924 Query 79768 TCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTA 79826 || |||| || || ||||| || | ||||| | || ||||||| | | | ||| Sbjct 22087925 TCTGTCTGGGACTCAATAATGGCATACCAGAGCTGCT-GAGCCTTCACCACACGCTTCAC 22087983 Query 79827 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTC 79886 ||| || |||| |||| || || | | ||| ||||| || ||||| ||||| Sbjct 22087984 CCTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTC 22088043 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 | |||||||| |||| |||||||| | ||||| | | | | || |||| || Sbjct 22088044 CAGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTT 22088103 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGT 80005 ||| || ||||| |||||||| || || ||| || || ||||||| ||| |||||||| | Sbjct 22088104 CATGAACAGATCTGGAATCCACAGGGC-ATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCT 22088162 Query 80006 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 80065 ||||||| ||||| || || || ||||| | | | |||| | ||||| || |||| || Sbjct 22088163 TTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGT 22088222 Query 80066 ATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 80125 | ||||| | |||| |||| |||||| || |||||||| | || | ||| || || | Sbjct 22088223 ACATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGT 22088282 Query 80126 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 80185 | |||||||||||||| || | | || ||||| |||||||||| || | ||| |||| Sbjct 22088283 TGTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGC 22088342 Query 80186 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245 | || | | | ||| || | | | || || || || || ||| || || | Sbjct 22088343 TCCCGGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGA 22088402 Query 80246 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTA 80305 || || | || | || ||||| ||||| || ||||| || || ||||| || | Sbjct 22088403 GGGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGA 22088462 Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 | || ||||| |||| || | || | ||||| || || || | ||| || || |||| Sbjct 22088463 GGAAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGT 22088522 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 | || ||||| || || ||||| || |||||||||||||| |||| || || || | | Sbjct 22088523 GGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTCT 22088582 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 ||| || || || | || | ||| | ||||||||| || | || | | || || Sbjct 22088583 CATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCAT 22088642 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | || |||| || || || |||| ||||| || || || ||||||| || || | Sbjct 22088643 TGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAAT 22088702 Query 80546 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 80605 ||| |||||||| || |||| ||||| || |||||| | | | | ||| Sbjct 22088703 CTCTGTCGTAAATTATGGCCGAATTGAGGCGGTC------TTTGTTCTCCAGAACAATGT 22088756 Query 80606 TGA------TACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 80659 ||| |||| || || || || || | | || |||||| | |||||| Sbjct 22088757 TGAGCGTCTCTTTTGAGATCATGGGGGAGTGCTGCTTGTTCAGAGGATTGATGTAGTTGT 22088816 Query 80660 ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGG 80719 | | || ||||||||||||||||| | |||||| || || ||||| || ||||| || | Sbjct 22088817 ACAGGTCTTCCATCACTTCACTAAACACTTTTTTCGTCTCTTTGTGGAGGTTTGAGACAG 22088876 Query 80720 CTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTT 80779 | || || ||||| | ||||||||| || || |||| || || ||||| || |||| Sbjct 22088877 CGATCCTTGCGGCGAGAATGGCATAGTCGGGGTGTTTAGTTGTCAGTGTGGCAGCAATTT 22088936 Query 80780 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCT 80839 |||||||||| ||||| | || || || || || || | || | || ||||| |||| Sbjct 22088937 CGGCTGCCAGCGTGTCAAGCTCCACAGTGGTGACACCGCTGTACAAACCCTGGATCACCT 22088996 Query 80840 TCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-A 80898 |||| | |||| | ||||| | ||| | |||| || || || || |||| Sbjct 22088997 TCATTGTGATTTGAGCTGGATCCACGAAATCTGAATTTAGACCGTAGCA-AAGCTTCTGG 22089055 Query 80899 ATACGAGACGTGATTTTATCAAACATGAC 80927 || ||||| |||||||||||||||||||| Sbjct 22089056 ATGCGAGAGGTGATTTTATCAAACATGAC 22089084 >seq4 Length=75030901 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 61466148 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61466089 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| || || || || || ||||||||||| || || || ||||||| Sbjct 61466088 TCAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGG 61466029 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 61466028 CCACCACACGCTCTCC 61466013 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 61475774 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61475833 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| ||||| || || || ||||||||||| || || || ||||||| Sbjct 61475834 TCAGCCAGAAGATGGCAGCAAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGG 61475893 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 61475894 CCACCACACGCTCTCC 61475909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718215854611080