Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 583 1e-161 seq4 84.2 3e-11 >seq6 Length=67274854 Score = 583 bits (646), Expect = 1e-161 Identities = 1272/1896 (67%), Gaps = 17/1896 (1%) Strand=Plus/Plus Query 71125 AGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 71184 || || ||||||||||| | || || |||||||| | || || |||||||| || || Sbjct 22087196 AGCAGGTGAGGATTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTG 22087255 Query 71185 CTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 71244 ||||| || | ||| | ||||| || || |||| || || || || || || || ||| Sbjct 22087256 CTGGTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGC 22087315 Query 71245 ATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAG-AGA 71303 || || || | || || |||||||| | |||||| ||| || ||||| || || Sbjct 22087316 ATCGGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGC 22087375 Query 71304 TTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTT 71363 |||| | | ||| || || | || ||||| || Sbjct 22087376 TTCC-AGTCCCACAGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTT 22087434 Query 71364 ACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACT 71423 || | || ||| | || || ||||| ||||| | | ||||| || || || Sbjct 22087435 GCTGACAGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCT 22087494 Query 71424 CGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTC 71483 |||||| | || | || || ||||| || ||||||| | || || || || || Sbjct 22087495 CGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTC 22087554 Query 71484 CGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAAT 71543 ||||| || || |||||| | || || || || ||||| || |||||||| ||||| Sbjct 22087555 TGGGCTTTCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAAT 22087614 Query 71544 ACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAAT 71603 || || || ||||| | ||| || || | |||||||| |||| || || || || || Sbjct 22087615 TCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGAT 22087674 Query 71604 ATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAA 71663 || || | || ||||| ||| |||| || |||||| |||| || || || Sbjct 22087675 TTCAATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAA 22087734 Query 71664 ATCAAATCTCCCATCTATT---ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAAC 71720 ||||| ||| ||| | || ||| ||| | |||| || || || ||||| || Sbjct 22087735 GTCAAAAGTCCGTTCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACAC 22087794 Query 71721 GGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTG 71778 || ||||| | | || || || | | || ||| ||||| || || || || ||| Sbjct 22087795 CGCCACCTCGTCTTTGCT--GGTGTACTCAACAACTTCGGTGCACAGGTTGCTGCATTTG 22087852 Query 71779 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAAC 71838 ||||| || | ||| || || |||||||| ||||||| ||||| || || || || | Sbjct 22087853 ATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTAT 22087912 Query 71839 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTAT 71897 || || || ||||| |||| || || ||||| || | ||||| | || ||||||| | Sbjct 22087913 GGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCATACCAGAGCTGCT-GAGCCTTCAC 22087971 Query 71898 TATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCC 71957 | | ||| ||| || |||| |||| || || | | ||| ||||| || || Sbjct 22087972 CACACGCTTCACCCTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCC 22088031 Query 71958 CCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCAT 72016 ||| ||| | ||| | |||||||| || || |||||||| | ||||| | | | | Sbjct 22088032 CCA-GCACTCGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTAC 22088090 Query 72017 CATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTT 72075 | |||| ||||| || ||||| |||||||| || || ||| || || ||||||| | Sbjct 22088091 TCTCCACTCTCTTCATGAACAGATCTGGAATCCACAGGGC-ATAGAAGAGGTCTCTGGCT 22088149 Query 72076 CTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 72135 || |||||||| |||||||| ||||| || || || ||||| | | | |||| | ||| Sbjct 22088150 CTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGC 22088209 Query 72136 CACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTAT 72195 || || |||| ||| ||||| | |||| || | |||||| || |||||||| | || Sbjct 22088210 CATGGCTCCAGGTACATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAG 22088269 Query 72196 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTC 72255 | ||| || || || |||||||||||||| || | | || ||||| ||||||||| Sbjct 22088270 CGAGCAGTATTGTTGTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTA 22088329 Query 72256 CCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCC 72315 || | ||| ||||| || | | | ||| ||| | | | || || || || || Sbjct 22088330 CCAGCGATGTAGCTCCCGGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCG 22088389 Query 72316 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 72375 ||| || || | || || | || | || ||||| ||||| || || || || || Sbjct 22088390 GATTTGGAAATGAGGGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCT 22088449 Query 72376 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 72435 ||||| || || || ||||| |||| || | || | ||||| || || || | | Sbjct 22088450 TTCATGGCGAGGAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGG 22088509 Query 72436 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGAT 72495 || || || ||||| || ||||| || || ||||| || |||||||||||||| |||| Sbjct 22088510 GTTGGTGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCA 22088569 Query 72496 TCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || || | | ||| || || || | || | ||| | ||| ||||| || | || Sbjct 22088570 TCGATGTCTCTCTCATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCG 22088629 Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615 | | || ||| || |||| || ||||| |||| ||||| || || || || Sbjct 22088630 GCCACTTTTCCATTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAG 22088689 Query 72616 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTA 72675 ||||| || || |||| |||||||| || |||||||||| || || | | | Sbjct 22088690 TTGTAAGAGAAATCTCTGTCGTAAATTATGGCCGAATTGAGGCGGTCTTTGTTCTCCAGA 22088749 Query 72676 ACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 72735 || || | | || |||| || || || || || | | || |||||| | Sbjct 22088750 ACAATGTTGAGCGTCTCTTTTGAGATCATGGGGGAGTGCTGCTTGTTCAGAGGATTGATG 22088809 Query 72736 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 72795 |||||| | | || ||||||||||||||||| | |||||| || || ||||| || ||| Sbjct 22088810 TAGTTGTACAGGTCTTCCATCACTTCACTAAACACTTTTTTCGTCTCTTTGTGGAGGTTT 22088869 Query 72796 GATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCT 72855 || || || || || ||||| ||||||||||| || || |||| || || ||||| Sbjct 22088870 GAGACAGCGATCCTTGCGGCGAGAATGGCATAGTCGGGGTGTTTAGTTGTCAGTGTGGCA 22088929 Query 72856 GCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGG 72915 || ||||| |||||||| ||||| | || || || || || || | || | || ||| Sbjct 22088930 GCAATTTCGGCTGCCAGCGTGTCAAGCTCCACAGTGGTGACACCGCTGTACAAACCCTGG 22088989 Query 72916 ATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAAT 72975 || |||||||| | |||| | ||||| | ||| | |||| || || || || Sbjct 22088990 ATCACCTTCATTGTGATTTGAGCTGGATCCACGAAATCTGAATTTAGACCGTAGCA-AAG 22089048 Query 72976 TTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 |||| || ||||| ||||||||||||||||| || Sbjct 22089049 CTTCTGGATGCGAGAGGTGATTTTATCAAACATGAC 22089084 >seq4 Length=75030901 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||| || || || |||||||| ||||| | ||| | Sbjct 61466148 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61466089 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || || || || || || ||||||||||| || || || ||||||| Sbjct 61466088 TCAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGG 61466029 Query 42207 C 42207 | Sbjct 61466028 C 61466028 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||| || || || |||||||| ||||| | ||| | Sbjct 61475774 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61475833 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | ||||| || || || ||||||||||| || || || ||||||| Sbjct 61475834 TCAGCCAGAAGATGGCAGCAAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGG 61475893 Query 42207 C 42207 | Sbjct 61475894 C 61475894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671089728651720