Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 125 1e-23 seq11 84.2 3e-11 >seq6 Length=67274854 Score = 125 bits (138), Expect = 1e-23 Identities = 346/524 (66%), Gaps = 16/524 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 || || || ||| ||| || || ||||| ||| | ||| | ||||| |||| | | Sbjct 22088328 ACCAATGGTAACTCCAACGGGCTGGTGCCCATGTTGAGAGTTTACAA--CAATACTGCTC 22088271 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || ||| ||||| || || ||| | || || || | ||| | ||| |||| || | Sbjct 22088270 GCTATGTTGATCAGGGGGGGAACAAAAGACCTGGAGCCTTTGCCATGTACCTGGAGCCAT 22088211 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| || || |||||||| | ||| || || ||| | || || ||| Sbjct 22088210 GGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGA 22088151 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 ||||||| ||| | || ||||| || ||| | |||||| ||||||||||| | || | Sbjct 22088150 GAGCCAGAGACCTCTTCTATGCCCTGTGGATTCCAGATCTGTTCATGAAGAGAGT---GG 22088094 Query 97045 ACGGTGGC---TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 | || | ||||| ||||||||| ||| || || || || ||| ||| |||| Sbjct 22088093 AGAGTAACCAAAACTGGTCCCTAATGTGTCCCAACGAGTGTCCTGGGCTGGACGAGTGCT 22088034 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGAC 97161 |||| || |||||||| |||||| || || | ||||| || |||| | Sbjct 22088033 GGGGGGAGGAGTTTGAAAAACTGTACACTAAATATGAAAACGAGGG--GA-GGGTGAAGC 22087977 Query 97162 GAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218 | || | | || | | || ||| | ||||| | | | ||| ||| || |||| Sbjct 22087976 GTGTGGTGAAGGCTCAGCAGCTCTGGTATGCCATTATTGAGTCCCAGACAGAAACGGGAA 22087917 Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278 | || ||||| || ||||| ||| | || | || || ||||| | | |||||| Sbjct 22087916 CGCCATACATGCTGTACAAAGATGCATGTAACAGGAAGAGTAACCAGCAGAATCTGGGCA 22087857 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 ||||||| || ||| |||||||| ||| |||| |||||| || Sbjct 22087856 CCATCAAATGCAGCAACCTGTGCACCGAAGTTGTTGAGTACACC 22087813 >seq11 Length=48234189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | || ||| | | | ||| ||| || ||||| |||||||| ||||||||| Sbjct 16878632 CTGTGGTACGCTATCATCGAGTCGCAGACAGAAACCGGAACGCCGTACATGCTCTACAAG 16878691 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || | || |||||||| | || |||||||||| || | ||||||| Sbjct 16878692 GACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATTAAATCCAGCAATCTG 16878751 Query 97299 TGCACGGAAATTGTAGAGTAC 97319 ||||| || || ||||||||| Sbjct 16878752 TGCACTGAGATAGTAGAGTAC 16878772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741004574673720