Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11 159 8e-34 seq4 86.0 1e-11 seq17 84.2 5e-11 >seq11 Length=48234189 Score = 159 bits (176), Expect = 8e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || || ||||| || || ||||| Sbjct 37620531 ATGCCACCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCT 37620590 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| |||||||| || |||||||| || |||||| Sbjct 37620591 GAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 37620650 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| ||||| || || || | ||| || || || || Sbjct 37620651 GGGATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCACTTGGCTCA 37620710 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||||||||| || || || ||||| |||||||| || Sbjct 37620711 ACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 37620763 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | || || || || | || || || |||||||| || ||||| Sbjct 37620303 ATTCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCT 37620362 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| ||||| || Sbjct 37620363 GAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGG 37620422 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| ||||| ||||| || | ||| || || || || Sbjct 37620423 GGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCG 37620482 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 37620483 ACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 37620532 >seq4 Length=75030901 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 ||| || |||||||| || ||||||||||| || ||||| |||||||| || || || || Sbjct 61465634 TCAGGAAGTACAGATACCAGAAGCCAGATGCTTCTACGGTTTCCAGATCGCCATGGAGAA 61465693 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||||| || ||||||||||| || | || || || || || Sbjct 61465694 CATTCACTCTGAGATGTACAGCCTGCTGATCGACACCTACAT 61465735 >seq17 Length=38284538 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||||||||| || ||||| ||||| || | || || || || |||||||||||||| | Sbjct 14424104 CTTTCTGAATGTTGTAGTCTGATAGGGTACGCCCATCCTCAAGCTGTTTTCCAGCAAAGA 14424045 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 | || | ||| |||||||| || |||||||| Sbjct 14424044 TCAGACGCTGCTGATCAGGGGGGATTCCTTC 14424014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151311405734076