Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq8 118 7e-22 >seq8 Length=57680405 Score = 118 bits (130), Expect = 7e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||||||||| || || | |||||||||||| |||||||| ||||| || || Sbjct 19730756 CATATCTTTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGATC 19730697 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || || |||| | |||||| || |||| |||| | | ||| || ||||| || Sbjct 19730696 CCCCTCCTCTCTGTCCGTGAAGCCCAGTTTGTCCAGAAAGGCCCGGGACCCGTTGGCATC 19730637 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||| ||| | || || || || || ||||| |||| ||||||||||| Sbjct 19730636 CCAAATCCTCACACCTTTGTCTGACAGCTCCTTGGCATTTGTGGACCC 19730589 Score = 111 bits (122), Expect = 1e-19 Identities = 125/166 (75%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || |||| || ||| |||||||| ||||| ||| |||||||||||||| || || Sbjct 19731634 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGAAGAGCATAGCTGGCGATGTTGAACGGC 19731575 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 ||||| | ||||| | | |||| | |||||| |||||||| || ||||| | || | Sbjct 19731574 ACCCCAAGACCCATAT-CGGCCGATCGCTGGTACAGCTGACAGGACAGCTCGCCATCACA 19731516 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 ||||| ||||| |||| | || |||||| || ||||| || ||| Sbjct 19731515 GACGTAGAACTGGCACAGAGCGTGGCACGGGGGCAGAGCCATGAGG 19731470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340113154416981